SecReT6
Protein ID: 186897111
SecReT6 ID281
T6SS typei1
Gene symbol-
Locus tagYPTS_3813
StrainYersinia pseudotuberculosis PB1/+
Repliconchromosome [GenBank: NC_010634] [Browse all T6SS(s) in this replicon]
Location [Strand]4253073..4255676 [-]
Producttype VI secretion ATPase
NoteTssH
UniProt IDB2K4W4
KEGG IDypb:YPTS_3813
PDB IDNA
Domain hit(s) vs Pfam AAA_2 [PF07724], Evalue: 7.50E-39, Aligned region: 222..299
AAA_2 [PF07724], Evalue: 7.50E-39, Aligned region: 602..763
AAA [PF00004], Evalue: 6.10E-19, Aligned region: 31..72
AAA [PF00004], Evalue: 6.10E-19, Aligned region: 222..334
AAA [PF00004], Evalue: 6.10E-19, Aligned region: 537..564
AAA [PF00004], Evalue: 6.10E-19, Aligned region: 608..728
AAA_5 [PF07728], Evalue: 9.10E-15, Aligned region: 51..74
AAA_5 [PF07728], Evalue: 9.10E-15, Aligned region: 222..299
AAA_5 [PF07728], Evalue: 9.10E-15, Aligned region: 607..726
ClpB_D2-small [PF10431], Evalue: 3.70E-13, Aligned region: 769..843
AAA_16 [PF13191], Evalue: 2.90E-11, Aligned region: 50..50
AAA_16 [PF13191], Evalue: 2.90E-11, Aligned region: 199..242
AAA_16 [PF13191], Evalue: 2.90E-11, Aligned region: 254..300
AAA_16 [PF13191], Evalue: 2.90E-11, Aligned region: 489..549
AAA_16 [PF13191], Evalue: 2.90E-11, Aligned region: 577..648
AAA_16 [PF13191], Evalue: 2.90E-11, Aligned region: 673..701
AAA_22 [PF13401], Evalue: 3.00E-08, Aligned region: 221..307
AAA_22 [PF13401], Evalue: 3.00E-08, Aligned region: 606..638
NACHT [PF05729], Evalue: 1.50E-06, Aligned region: 133..168
NACHT [PF05729], Evalue: 1.50E-06, Aligned region: 222..250
NACHT [PF05729], Evalue: 1.50E-06, Aligned region: 419..454
NACHT [PF05729], Evalue: 1.50E-06, Aligned region: 608..636
NACHT [PF05729], Evalue: 1.50E-06, Aligned region: 812..837
AAA_14 [PF13173], Evalue: 4.40E-05, Aligned region: 222..337
AAA_14 [PF13173], Evalue: 4.40E-05, Aligned region: 606..696
AAA_29 [PF13555], Evalue: 9.20E-05, Aligned region: 215..239
AAA_29 [PF13555], Evalue: 9.20E-05, Aligned region: 604..632
DUF258 [PF03193], Evalue: 0.0002, Aligned region: 188..239
DUF258 [PF03193], Evalue: 0.0002, Aligned region: 607..623
AAA_25 [PF13481], Evalue: 0.00023, Aligned region: 222..244
AAA_25 [PF13481], Evalue: 0.00023, Aligned region: 476..501
AAA_25 [PF13481], Evalue: 0.00023, Aligned region: 603..636
AAA_19 [PF13245], Evalue: 0.00035, Aligned region: 219..243
AAA_19 [PF13245], Evalue: 0.00035, Aligned region: 602..629
Arch_ATPase [PF01637], Evalue: 0.0012, Aligned region: 202..241
Arch_ATPase [PF01637], Evalue: 0.0012, Aligned region: 608..628
Arch_ATPase [PF01637], Evalue: 0.0012, Aligned region: 678..689
IstB_IS21 [PF01695], Evalue: 0.002, Aligned region: 216..246
IstB_IS21 [PF01695], Evalue: 0.002, Aligned region: 607..618
Sigma54_activat [PF00158], Evalue: 0.0051, Aligned region: 221..238
Sigma54_activat [PF00158], Evalue: 0.0051, Aligned region: 606..705
MobB [PF03205], Evalue: 0.0055, Aligned region: 222..246
MobB [PF03205], Evalue: 0.0055, Aligned region: 607..629
AAA_17 [PF13207], Evalue: 0.0062, Aligned region: 222..263
AAA_17 [PF13207], Evalue: 0.0062, Aligned region: 608..642
Protein Sequence: 867 a.a.     [Download]
>gi|186897111|ref|YP_001874223.1| type VI secretion ATPase [Yersinia pseudotuberculosis PB1/+]
MIQIDLPTLVNRLNPIARHSLEAAAAHCVSQQEAEITVSQVLLQMISTPLCDVRLILSHAGVEEDELRES
LDQRVSGYQAITQAYPSFSPLLVEWLQDSWLLASTEMEHSQLRSGVMLLTLLLSPSRYLVPTANRLLSPI
NRELLRQNFANWTADSAETPRAEKGAEAGNGAEINGDSLLARYASNMTEQARNGELDPVLCRDTEIDLMI
DILCRRRKNNPIVVGEAGVGKSALIEGLALRIVDNQVPEKLRNSELMTLDLGALQAGAAVKGEFEKRFKG
IMAEIAQSTTPIILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSR
RFQLVKVSEPSAQEATIIMRGLRTVYEQAHGVLIDDEALQAAAVLSDRYISGRQLPDKAIDVLDTAAARV
AINLTSAPRQVSALKNELYHQGMEIEMLEREQRLSLSRPDERLSVLQQQRIEIEQQLIALNTGWEKQQHL
VQQIIALRAVLLAQEESATDEQVVNLTALSDELERLQQHQTLVSPHVDKSQIAAVIAEWTGVPLNRLSQS
ELAVVTELPSYLGQQIKGQETAIHCLHQHLLTARADLRRPGRPMGAFLLVGPSGVGKTETVLQIADLLYG
GRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAF
DKGELADGEGRIIDCKNIVFFLTSNLGYQTIVDHADEPALLNERLYPELSAFFKPALLARMEVVPYLPLG
METLQIIIHGKLNRLDTLLRQRFSADVVIEPEVIDEILLRATRAENGARMLESIIDGALLPPVSLLLLQK
VAAGTAISHIRIAVEGNVFTAQVEGAI
 
Nucleotide Sequence: 2604 bp     [Download]
>gi|186893344|ref|NC_010634.1|:c4255676-4253073 Yersinia pseudotuberculosis PB1/+ chromosome, complete genome
ATGATTCAAATTGACTTGCCCACACTCGTAAACCGCCTTAATCCCATTGCCCGCCATTCTCTGGAAGCGG
CGGCGGCGCATTGCGTCAGTCAGCAGGAAGCTGAAATTACGGTCTCCCAAGTGCTACTGCAAATGATCTC
CACACCATTATGTGATGTCAGGTTAATCCTGAGCCATGCGGGTGTTGAGGAGGATGAACTACGGGAGTCG
CTCGATCAACGTGTTTCAGGCTATCAAGCTATTACCCAGGCCTACCCGAGTTTTTCCCCATTACTGGTGG
AATGGTTACAAGACAGTTGGTTGCTGGCATCGACAGAGATGGAACACAGCCAACTCCGTAGCGGCGTGAT
GTTATTGACGTTATTGCTCAGCCCGTCGCGCTATCTGGTTCCTACGGCCAACCGGCTACTGTCTCCGATT
AACCGTGAGTTACTGCGTCAGAATTTTGCTAACTGGACGGCAGACTCAGCAGAAACACCGCGAGCAGAAA
AAGGGGCTGAAGCTGGCAACGGCGCAGAAATCAATGGTGACAGCTTGCTGGCCCGCTATGCCAGCAATAT
GACCGAACAGGCCCGTAACGGGGAATTAGACCCTGTGCTGTGTCGGGATACCGAAATCGATCTGATGATC
GATATTCTGTGCCGCCGCCGCAAAAATAACCCGATAGTGGTGGGTGAAGCGGGGGTAGGGAAAAGTGCGC
TGATCGAAGGTTTAGCCCTGCGTATCGTGGATAATCAGGTGCCAGAAAAACTGCGTAACAGCGAGTTGAT
GACGCTGGATTTAGGCGCGCTTCAGGCTGGCGCGGCAGTGAAAGGCGAATTTGAGAAGCGTTTCAAGGGC
ATCATGGCGGAAATTGCGCAGTCCACGACGCCAATTATCCTGTTTATTGATGAAGCACACACGCTGATCG
GGGCCGGTAACCAACAGGGCGGGTTAGACATTTCCAATCTGCTCAAACCCGCTTTAGCGCGTGGTGAACT
GAAAACGATTGCGGCAACCACCTGGAGCGAATACAAAAAATACTTTGAAAAAGATGCTGCGCTGTCGCGC
CGTTTCCAGTTGGTCAAAGTTTCTGAACCCAGCGCGCAAGAGGCCACGATTATCATGCGTGGCCTACGTA
CAGTTTATGAACAGGCGCATGGCGTCCTGATCGATGATGAAGCATTGCAAGCTGCGGCGGTGCTCAGTGA
CCGCTATATTTCAGGGCGGCAGTTGCCAGATAAAGCCATCGACGTGTTAGATACCGCAGCCGCACGTGTT
GCCATCAATCTCACCTCTGCACCGCGTCAGGTTTCGGCACTGAAAAACGAACTCTACCATCAGGGGATGG
AAATCGAGATGCTGGAGCGGGAGCAACGCCTCAGCTTAAGCCGCCCGGATGAGCGGTTATCCGTTTTACA
ACAGCAGCGAATTGAGATCGAACAGCAACTCATTGCCCTGAATACCGGTTGGGAAAAGCAACAACATTTG
GTCCAGCAGATTATCGCACTGAGAGCGGTCCTGTTGGCACAAGAAGAGAGCGCCACAGATGAGCAAGTGG
TCAATCTGACAGCGCTGAGCGATGAGTTGGAACGGTTGCAACAGCACCAGACGCTGGTCTCGCCCCATGT
GGATAAGAGCCAGATTGCGGCGGTGATCGCGGAATGGACCGGTGTACCGCTAAACCGCCTTTCTCAGAGT
GAATTGGCGGTGGTTACTGAATTGCCCTCTTATCTGGGGCAGCAGATCAAAGGACAAGAGACGGCTATCC
ATTGCTTGCACCAACACTTGCTGACCGCAAGGGCGGATTTACGTCGCCCAGGTCGCCCAATGGGGGCTTT
CCTGTTGGTTGGACCTAGCGGCGTGGGTAAAACGGAAACCGTGCTACAGATTGCCGACCTGCTCTATGGT
GGCCGCCAATATCTCACCACCATCAATATGTCCGAATTCCAAGAGAAGCATACCGTCTCGCGCCTGATTG
GTTCACCTCCGGGCTACGTCGGGTATGGTGAAGGCGGCGTACTGACCGAAGCTATTCGTCAAAAACCTTA
CTCGGTAGTGCTACTGGATGAAGTGGAAAAAGCCCACCCCGATGTGCTAAATCTGTTTTATCAGGCCTTC
GATAAGGGCGAGTTGGCGGACGGTGAAGGCCGCATCATCGATTGCAAAAATATCGTATTTTTCCTGACCT
CCAATCTGGGATACCAGACCATTGTTGATCATGCAGACGAGCCTGCATTGCTCAATGAACGGCTCTACCC
CGAGCTATCGGCATTCTTTAAACCTGCGCTACTGGCCCGCATGGAAGTGGTTCCTTATCTGCCGCTGGGC
ATGGAAACGCTGCAAATTATCATTCACGGCAAACTGAACCGTCTGGATACGCTGCTGCGCCAACGCTTTA
GTGCTGATGTGGTCATTGAACCTGAAGTGATCGACGAAATCCTGCTACGCGCGACCCGTGCCGAAAATGG
TGCGCGTATGCTCGAGTCGATTATCGACGGTGCGCTATTACCACCGGTTTCTCTGTTGTTATTACAGAAA
GTGGCCGCTGGCACCGCTATCAGCCACATTCGGATCGCGGTAGAGGGGAATGTGTTTACTGCACAGGTTG
AGGGAGCGATATGA
 Primer design