SecReT6
Protein ID: 239813572
SecReT6 ID348
T6SS typei3
Gene symbol-
Locus tagVapar_0553
StrainVariovorax paradoxus S110
Repliconchromosome I [GenBank: NC_012791] [Browse all T6SS(s) in this replicon]
Location [Strand]612383..613513 [-]
Producthypothetical protein
NoteTssM
UniProt IDC5CKB8
KEGG IDvap:Vapar_0553
PDB IDNA
Domain hit(s) vs Pfam ImcF-related_N [PF14331], Evalue: 6.50E-32, Aligned region: 153..339
ImcF-related_N [PF14331], Evalue: 6.50E-32, Aligned region: 340..367
Protein Sequence: 376 a.a.     [Download]
>gi|239813572|ref|YP_002942482.1| hypothetical protein Vapar_0553 [Variovorax paradoxus S110]
MPAALLPAHFFWLLLALCLAGFALLYAAVHDAGRGARRRALRRRIAALGPPAAEADEAAIESMREAMRKA
MSHARQLLRQPSCQQAAPVPWFLFLGDAAANLPGLLAAAHAEHLAPSGSEPFGEPYWRWWLTGSMTAIEL
HPSAVSDVAAAPHTRALWLQALLALAERRDRVPINGVVACVAASELLHPSSAGMKPLAGRMRRLLDEAAD
TLRLQLPVYLVVTGLEQLAGYATLRGALPPEVLAQVIGHRLAGPAAHGETAAERLDALFDPMARQLHALR
MALLREQPGASGRLAIHEFIEALRALQPALREVAEALFESHGRGSRGPRWRGLYVTAAASGAAGGAFVTD
LFERFLPADQPLARPGRAPNASAAKA
 
Nucleotide Sequence: 1131 bp     [Download]
>gi|239813019|ref|NC_012791.1|:c613513-612383 Variovorax paradoxus S110 chromosome 1, complete sequence
ATGCCCGCCGCGTTGTTGCCTGCCCATTTCTTCTGGCTCCTGCTCGCGCTGTGCCTGGCCGGCTTTGCGC
TGCTGTACGCCGCGGTCCACGACGCGGGCCGCGGTGCGCGCCGCCGCGCGCTGCGCCGGCGCATTGCCGC
ACTCGGCCCGCCGGCGGCCGAAGCCGACGAAGCCGCGATCGAATCCATGAGGGAGGCCATGAGGAAAGCC
ATGTCGCACGCACGCCAGCTCCTGCGCCAGCCATCGTGCCAGCAAGCCGCACCGGTGCCCTGGTTCCTCT
TTCTCGGCGATGCGGCGGCCAACCTGCCGGGGCTGCTGGCGGCGGCCCATGCCGAGCACCTGGCACCTTC
GGGCAGCGAGCCTTTCGGCGAACCCTACTGGCGCTGGTGGCTCACCGGCTCGATGACGGCCATCGAGCTG
CACCCGAGCGCCGTCAGCGACGTGGCCGCGGCGCCGCACACGCGTGCGCTGTGGCTCCAGGCGCTCCTCG
CACTGGCCGAGCGGCGCGACCGCGTGCCGATCAACGGCGTGGTGGCCTGCGTGGCGGCGAGCGAACTGCT
GCACCCGTCCAGCGCAGGCATGAAGCCGCTGGCCGGCAGGATGCGCCGGCTGCTCGACGAGGCCGCGGAC
ACCCTGCGCCTGCAGCTGCCGGTCTACCTGGTCGTGACCGGCCTGGAGCAGCTGGCCGGCTATGCCACGC
TGCGCGGTGCGCTGCCGCCCGAAGTGCTCGCACAGGTGATCGGCCATCGCCTGGCCGGGCCGGCCGCCCA
CGGCGAGACCGCGGCCGAACGGCTCGATGCCCTGTTCGACCCCATGGCGCGCCAGCTGCATGCGCTGCGC
ATGGCGCTGCTGCGCGAACAGCCGGGCGCATCGGGCCGGCTCGCGATCCATGAGTTCATCGAGGCGCTGC
GGGCGCTGCAGCCCGCATTGCGCGAAGTGGCCGAGGCCCTGTTCGAAAGCCATGGCCGCGGCTCGCGCGG
CCCGCGATGGCGCGGCCTCTATGTGACGGCTGCCGCATCGGGTGCGGCCGGCGGCGCCTTCGTGACCGAC
CTGTTCGAGCGCTTCCTGCCCGCCGACCAGCCGCTCGCGCGGCCCGGCCGCGCGCCGAACGCCAGCGCGG
CGAAGGCGTGA
 Primer design