SecReT6
Protein ID: 253987745
SecReT6 ID355
T6SS typei1
Gene symbol-
Locus tagPAU_00262
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [GenBank: NC_012962] [Browse all T6SS(s) in this replicon]
Location [Strand]286872..288842 [-]
Producthypothetical protein
NoteTssI
UniProt IDB6VM62
KEGG IDpay:PAU_00262
PDB IDNA
Domain hit(s) vs Pfam Phage_GPD [PF05954], Evalue: 2.50E-63, Aligned region: 28..331
Phage_GPD [PF05954], Evalue: 2.50E-63, Aligned region: 500..545
Phage_base_V [PF04717], Evalue: 3.40E-24, Aligned region: 370..462
Protein Sequence: 656 a.a.     [Download]
>gi|253987745|ref|YP_003039101.1| hypothetical protein PAU_00262 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
MADSGLVFTLSVGNLPAHTFAVVEFTLNEALSTPFSLDATLTSADPDIDFKDVLDNAATLSVYRDGLPER
EVTGIVTQFEQSTTGRHRTHYSLSLQPALWRAGLRVNSRIFQHQSITDIIDTLLKENGIRDIVYTLGYEH
PEREFCVQYDESDLAFLHRLLADEGIFYYFEFNQGKNGQTIFFADSCLALGNRFSVPYNPEPDVLGRQGS
IQQFRWREQVGIQGISLRDRTFKNPPWTAEYHFYESKSANQRTDLTSYYHYDFPGRYKDERGEHMSRYRL
EALRRNDLLGHAHSDCFFLWPGLMFTLSHHPKETFNVPWQVISIHHHGRQPQADETRSGDTGTTLTNHFT
FGDRDRSWRPSPYPKPRIDGLQVATVVGPEGEEIFCDEYGRVRVQFAWDQYGQFNDQSSCWIRVSQAWAG
KGWGMITIPRVGQEVLVDFLHGDPDQPIITGRAYHASNLPPNRLPMAKTQMSIRSKTHKGEGFNELRFED
EKDREEVFIHAQKNLAIQVRNSRDERINYNRTTSIGHDDELVIAHNRKVTVEGQQEHKTTGNYLAQIDGD
KALQVKGDVAQKIQGIFSVDANGDLTVQSGSKISLRVGGNFIVIHAGGVDIKGPAINLNSGGSPGDLLQP
ANPAILQAAASAGSMFVAHCPMKDNQ
 
Nucleotide Sequence: 1971 bp     [Download]
>gi|253987483|ref|NC_012962.1|:c288842-286872 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 chromosome, complete genome
ATGGCAGATTCAGGACTGGTTTTTACCCTCTCCGTAGGTAACCTCCCAGCTCACACTTTTGCAGTCGTTG
AATTTACACTGAATGAAGCACTCTCAACACCCTTCAGTCTGGACGCCACACTCACCAGCGCTGACCCCGA
CATCGATTTTAAAGATGTCCTGGATAACGCCGCTACCCTCTCCGTCTACCGTGACGGACTACCCGAACGC
GAGGTCACCGGCATTGTCACCCAGTTTGAACAAAGCACCACCGGGCGCCATCGTACCCATTACTCCCTGA
GCCTGCAACCCGCACTCTGGCGGGCCGGATTACGCGTCAATTCCCGGATTTTTCAGCATCAATCCATTAC
CGATATCATTGACACCCTGCTGAAAGAAAACGGCATCCGGGATATTGTTTACACCCTCGGCTATGAACAT
CCCGAGCGGGAATTCTGCGTCCAGTACGACGAAAGCGACCTGGCTTTTCTTCACCGCCTGTTAGCCGATG
AAGGCATTTTTTATTACTTCGAGTTTAACCAAGGTAAAAACGGCCAGACCATTTTCTTCGCCGATTCCTG
TCTGGCACTCGGTAACCGCTTTTCCGTCCCCTATAACCCGGAACCCGATGTGCTGGGCAGGCAGGGCAGT
ATCCAGCAGTTCCGCTGGCGTGAACAGGTCGGGATTCAGGGCATTTCTCTGCGCGACCGCACCTTTAAAA
ACCCGCCCTGGACCGCAGAATATCACTTTTACGAGTCCAAATCGGCCAACCAGCGTACCGATTTAACCAG
CTATTATCACTACGATTTCCCCGGGCGTTATAAAGATGAACGCGGGGAACACATGAGCCGTTATCGTCTG
GAAGCCTTACGCCGCAATGACCTCCTCGGCCATGCACACAGTGACTGCTTTTTCCTCTGGCCGGGCCTCA
TGTTTACCCTCTCTCATCACCCCAAAGAGACATTTAATGTTCCGTGGCAGGTCATCAGCATCCACCACCA
TGGCCGGCAGCCCCAGGCCGATGAAACCCGCTCCGGTGACACGGGAACCACGCTGACCAACCACTTTACC
TTTGGCGACCGTGACCGTTCCTGGCGGCCTTCCCCCTACCCCAAACCCCGCATTGACGGCCTGCAAGTAG
CAACCGTGGTCGGCCCCGAAGGCGAAGAGATCTTTTGTGACGAGTACGGCCGGGTGCGGGTACAGTTTGC
CTGGGATCAATATGGTCAGTTTAATGACCAGAGTTCCTGCTGGATACGGGTCAGTCAGGCATGGGCTGGC
AAAGGCTGGGGCATGATAACCATCCCACGCGTGGGTCAGGAAGTGCTGGTGGACTTTTTACATGGCGATC
CGGACCAGCCCATTATCACCGGACGCGCTTACCATGCTAGCAACCTCCCCCCGAACCGTCTGCCAATGGC
TAAAACCCAGATGTCAATCCGGTCAAAAACTCACAAAGGAGAAGGCTTTAACGAACTGCGGTTTGAAGAT
GAAAAAGACCGGGAAGAGGTATTTATCCACGCCCAGAAAAACCTGGCCATTCAGGTGCGTAATTCCCGGG
ACGAGCGGATTAACTACAACCGCACCACCAGTATCGGCCACGATGATGAACTGGTGATTGCCCACAACCG
TAAAGTGACCGTGGAAGGCCAGCAGGAGCATAAAACGACCGGCAATTATCTTGCCCAGATCGACGGTGAC
AAGGCATTGCAGGTCAAAGGCGATGTGGCCCAAAAAATCCAGGGCATATTCAGTGTTGACGCCAACGGCG
ACCTCACCGTACAGAGTGGCAGCAAAATCAGCCTGCGAGTCGGCGGGAATTTTATCGTCATTCATGCCGG
GGGCGTTGATATCAAAGGCCCGGCCATTAACCTCAATTCCGGTGGCAGTCCGGGGGACTTATTGCAACCG
GCTAATCCGGCGATTTTACAGGCCGCCGCCAGTGCCGGCTCCATGTTCGTGGCGCACTGCCCAATGAAGG
ATAATCAATAA
 Primer design

Protein ID: 253987756
SecReT6 ID355
T6SS typei1
Gene symbol-
Locus tagPAU_00273
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [GenBank: NC_012962] [Browse all T6SS(s) in this replicon]
Location [Strand]298797..300761 [-]
Producthypothetical protein
NoteTssI
UniProt IDB6VM73
KEGG IDpay:PAU_00273
PDB IDNA
Domain hit(s) vs Pfam Phage_GPD [PF05954], Evalue: 6.60E-63, Aligned region: 28..331
Phage_base_V [PF04717], Evalue: 5.60E-24, Aligned region: 370..462
Protein Sequence: 654 a.a.     [Download]
>gi|253987756|ref|YP_003039112.1| hypothetical protein PAU_00273 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
MADSGLVFTLSVGNLPAHTFAVVEFTLNEALSTPFSLDATLTSADPDINFKDVLDNSATFSVYRDGLPER
EVTGIVTQFEQSTAGRHRSHYSLTLQPALWRAGLRVNSRIFQHQSITDIIDTLLKENGIRDIVYTLGYEH
PEREFCVQYDESDLAFLHRLLADEGIFYYFEFNQGKNGQTIFFADSCLALGNRFSVPYNPEPDVLGRQGS
IQQFRWREQVGIQGISLRDRTFKNPPWTAEYHFYESKSANQRTDLTSYYHYDFPGRYKDERGEHMSRYRL
EALRRNDLLGHAHSDCFFLWPGLMFTLSHHPKETFNVPWQVISIHHHGRQPQADETRSGDTGTTLTNHFT
FGDRDRSWRPSPYPKPRIDGLQVATVVGPEGEEIFCDEYGRVRVQFAWDQYGQFNDQSSCWIRVSQAWAG
KGWGMIAIPRVGQEVLVDFLHGDPDQPIITGRAYHASNLPPNRLPMAKTQMSIRSKTHKGEGFNELRFED
EKDREEVFIHAQKNLAIQVRNSRDERINYNRTTSIGHDDELVIAHNRKITVEGQQEHKTTGSYIELIERD
KNLVIKGDDIRSVAGTLGYQAEGDITIKSDTRITLRVGNNFVVIHHGGVDIKGTAINLNSAGSPGDVSLP
AMPSVLKAAAALGMPFVAHCSSKE
 
Nucleotide Sequence: 1965 bp     [Download]
>gi|253987483|ref|NC_012962.1|:c300761-298797 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 chromosome, complete genome
ATGGCAGATTCAGGACTGGTTTTTACCCTCTCCGTGGGTAACCTCCCAGCTCACACTTTTGCAGTCGTTG
AATTTACACTGAATGAAGCACTCTCGACACCCTTCAGTCTGGACGCCACACTCACCAGCGCTGACCCGGA
TATCAACTTTAAGGATGTTCTGGACAATTCCGCCACCTTCTCCGTCTACCGTGACGGACTCCCGGAACGC
GAAGTCACCGGCATTGTCACCCAGTTTGAACAAAGCACCGCCGGACGCCATCGCAGTCATTATTCCCTGA
CCCTGCAACCCGCACTCTGGCGAGCCGGATTACGCGTCAATTCCCGGATTTTTCAGCATCAATCCATTAC
CGATATTATTGACACCCTGCTGAAAGAAAACGGCATCCGGGATATTGTTTACACCCTCGGCTATGAACAT
CCCGAGCGGGAATTCTGCGTCCAGTACGACGAAAGCGACCTGGCCTTTCTTCACCGCCTGTTAGCCGATG
AAGGCATTTTTTATTACTTCGAGTTTAACCAAGGTAAAAACGGCCAGACCATTTTCTTCGCCGATTCCTG
TCTGGCTCTCGGTAACCGCTTTTCCGTCCCCTATAACCCGGAACCCGATGTGCTGGGCAGGCAGGGCAGT
ATCCAGCAGTTCCGCTGGCGTGAACAGGTCGGGATTCAGGGCATTTCTCTGCGCGACCGCACCTTTAAAA
ACCCGCCCTGGACCGCAGAATATCACTTTTACGAGTCCAAATCGGCCAATCAGCGTACCGATTTAACCAG
CTATTATCACTACGATTTCCCCGGGCGTTATAAAGATGAACGCGGGGAACACATGAGCCGTTATCGTCTG
GAAGCCTTACGCCGCAATGACCTCCTCGGCCATGCACACAGTGACTGCTTTTTCCTCTGGCCGGGCCTCA
TGTTTACCCTCTCTCATCACCCCAAAGAGACATTTAATGTTCCGTGGCAGGTCATCAGCATCCACCACCA
TGGCCGGCAGCCCCAGGCCGATGAAACCCGCTCCGGTGACACGGGAACCACGCTGACCAACCACTTTACC
TTTGGCGACCGTGACCGTTCCTGGCGGCCTTCCCCCTACCCCAAACCCCGCATTGACGGCCTGCAAGTAG
CAACCGTGGTCGGCCCCGAAGGCGAAGAGATCTTTTGTGACGAGTACGGCCGGGTGCGGGTACAGTTTGC
CTGGGATCAATATGGTCAGTTTAATGACCAGAGTTCCTGCTGGATACGGGTCAGTCAGGCATGGGCTGGC
AAAGGCTGGGGCATGATAGCCATCCCACGCGTGGGGCAGGAAGTGCTGGTGGACTTTTTACATGGCGATC
CGGACCAGCCCATTATCACCGGACGCGCTTACCATGCCAGCAACCTCCCTCCCAACCGCCTGCCGATGGC
TAAAACCCAGATGTCAATCCGGTCAAAAACTCACAAAGGAGAAGGCTTTAACGAACTGCGGTTTGAAGAT
GAAAAAGACCGGGAAGAGGTATTTATCCACGCCCAGAAAAACCTGGCCATTCAGGTGCGCAATTCCCGGG
ACGAGCGGATTAACTACAACCGCACCACCAGTATCGGCCACGATGATGAACTGGTGATTGCCCACAACCG
CAAAATAACCGTGGAAGGGCAACAGGAGCATAAAACGACCGGAAGTTATATCGAGTTAATCGAGCGGGAC
AAAAATCTGGTTATAAAAGGCGATGATATCAGATCAGTTGCAGGTACATTAGGTTATCAAGCCGAAGGGG
ATATCACCATAAAAAGTGATACCCGGATAACTTTACGGGTCGGTAACAATTTTGTTGTCATCCATCATGG
GGGGGTAGATATAAAAGGGACTGCAATAAATTTAAACTCAGCGGGAAGCCCAGGTGATGTTTCTTTACCT
GCCATGCCTTCAGTTTTGAAAGCCGCCGCCGCGCTCGGTATGCCATTTGTCGCCCACTGTAGCTCAAAGG
AGTGA
 Primer design