SecReT6
Protein ID: 253991261
SecReT6 ID358
T6SS typei3
Gene symbol-
Locus tagPAU_03788
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [GenBank: NC_012962] [Browse all T6SS(s) in this replicon]
Location [Strand]4394248..4397805 [+]
Producthypothetical protein
NoteTssM
UniProt IDB6VLA2
KEGG IDpay:PAU_03788
PDB IDNA
Domain hit(s) vs Pfam ImcF-related_N [PF14331], Evalue: 7.90E-78, Aligned region: 200..464
IcmF-related [PF06761], Evalue: 2.20E-72, Aligned region: 298..321
IcmF-related [PF06761], Evalue: 2.20E-72, Aligned region: 514..817
DUF1215 [PF06744], Evalue: 1.90E-27, Aligned region: 558..597
DUF1215 [PF06744], Evalue: 1.90E-27, Aligned region: 632..659
DUF1215 [PF06744], Evalue: 1.90E-27, Aligned region: 925..1048
Protein Sequence: 1185 a.a.     [Download]
>gi|253991261|ref|YP_003042617.1| hypothetical protein PAU_03788 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
MLRAFIAIITNRLFWGALIVAALCLLIWIIGPFIAIGDHHPLATEVQRQIAITALISLWLLLRLLPFLYQ
VWVNARLRRRLHHVSNVTPTTRNASQSLADNFKQAASLIKRGLRLNGEQLTTRLGKFYLYRLPWYLVLGT
KGCGKDKSLLNSGLDFYHTTYPSQFAFPETNAESHCSWYFTLQGVILSPAGEYLKEGNPLWQALLKLLKR
YRPRQPINAVILTISVQDLLQQDNDAQYHQALLLRKRLMDLRLQLKIDFPVYVMITKADLLPGFSSYFNG
FYGEELDQVWGFTFPWEQALHSHNDLQQMLDEQYDRLQQRLDAALADTLITQQDITQREQSFAFPQAFAT
LRPVLMRYLSIIFATSGFDRPWLPHGLYFTSANQKHGEFQHSNGTTQDNLFDYSYALSSVTNSDGETTHR
TARSYFLRQLFQKIILAESGLAGINRMYELRRRFMLLTGCGLLLSLMAGICLLLLTSYHNNKSYLAQITA
RLPLLEQQGRALNKPSARDLPHLIQYLTQLQSLTTNQQINPDSPPLVYGMGLYQGPQLNSASYPVYQHAL
KNLLLPLVTQQVESILRQQADSNNSESTYEALKAYQMLFQTQHYDGKFLTAWLMLNLSHIPSGEKLNEAQ
RQALQEHLYQLLNHSQPSWSQHKDQQLIQEAIKNIMRSTFSQRVYTSIKKRLINSGRFKSVNLLDLAGSQ
AELVLKRKSDLPDTAAIPGFFTPDGYWHGLVAQVDDTVKTLHDTDRWVLNIPPQVQEGCDAACRVRQLYM
DDFMLEWDTFLNDIALIPTSSLNQRINNVRILSGAHSPLRNLLIGISHIVALSPPEDHGKLTQLGQQLND
EASRKLQNLFPAVRTTPAPPSPEQIVRSHYRDLLDLARPQGNNSDAIAFDDLFKKLGDLYRYLTALQENG
EATASSSGTILTQLQADAGRLPAPFRSIIMDMTQGAKGDTQQQAVSRIHQLANAQLSDFCREAIAGRYPL
SRHSKRDMTPDDMAHMFAPNQGLMDRFFNQYLVDKVNTQGNEWRFFPWALGSTKPEDQSLLKTFRQAQFV
RDAFFGTASSQPSFSLTLQPLRMDNDILTLSLTLNDQNASYSHGPLTSWYFTWPGSNNAGKAKLTMLLAN
GKTKSLETSGPWALNRLIDAGKWFQEDSMHYRITFNLAGHQATLILTPDSIHNPFVLPEFTCIKP
 
Nucleotide Sequence: 3558 bp     [Download]
>gi|253987483|ref|NC_012962.1|:4394248-4397805 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 chromosome, complete genome
ATGTTAAGAGCATTTATCGCCATCATCACTAATCGCCTGTTTTGGGGGGCGCTGATCGTTGCCGCATTGT
GTCTGCTTATTTGGATCATCGGGCCATTTATCGCCATCGGTGATCACCATCCACTAGCAACCGAAGTCCA
ACGCCAAATAGCTATCACCGCCCTGATTTCGCTGTGGTTATTGCTACGGCTGTTGCCTTTTCTCTATCAG
GTATGGGTAAATGCTCGTTTGCGCCGCCGTTTACACCATGTCAGCAATGTCACGCCAACAACCCGAAACG
CCTCTCAATCCCTCGCTGACAATTTTAAACAAGCGGCGTCCCTGATCAAACGAGGGTTACGTCTGAATGG
CGAACAACTCACCACACGTCTGGGCAAATTCTATCTCTATCGCCTGCCCTGGTATCTGGTTTTGGGTACC
AAAGGATGTGGTAAAGATAAATCTCTACTGAATTCAGGGTTAGACTTCTACCACACAACCTATCCAAGCC
AGTTCGCTTTTCCTGAAACCAATGCCGAATCGCACTGTTCATGGTATTTCACCCTGCAAGGCGTCATTCT
TAGCCCTGCCGGAGAGTACCTTAAGGAAGGCAACCCTTTGTGGCAGGCCTTATTAAAACTGCTAAAACGT
TATCGTCCACGTCAGCCAATCAACGCCGTTATTCTGACAATCAGCGTACAAGATCTGCTGCAACAAGATA
ATGACGCGCAATATCATCAGGCGTTATTACTGCGTAAGAGACTGATGGATTTACGTTTACAACTGAAAAT
TGACTTTCCGGTCTACGTGATGATCACCAAAGCTGACTTGCTCCCGGGGTTCAGTAGCTACTTCAACGGT
TTTTATGGCGAAGAATTGGATCAGGTCTGGGGTTTCACCTTTCCCTGGGAACAAGCATTGCATTCCCATA
ACGATTTACAACAGATGCTGGATGAGCAATATGACCGTTTGCAGCAACGTCTGGACGCTGCACTGGCGGA
TACCTTAATAACCCAACAGGATATCACTCAACGGGAACAAAGCTTTGCCTTCCCACAGGCATTTGCCACC
CTACGCCCAGTCTTGATGCGTTATCTGAGTATTATTTTTGCCACTTCTGGCTTTGATCGCCCATGGTTAC
CACATGGTCTCTATTTCACCAGCGCTAACCAAAAGCATGGGGAATTTCAGCACAGTAATGGAACTACGCA
AGATAATCTGTTCGATTACAGTTATGCGCTTTCCTCTGTTACCAATAGCGATGGCGAAACAACTCACCGG
ACTGCCCGCAGTTACTTTCTGAGACAATTATTCCAAAAAATCATTTTGGCTGAGAGTGGGCTGGCAGGGA
TCAACCGCATGTACGAATTGCGCCGACGCTTCATGCTACTGACCGGATGTGGACTATTACTCAGTCTAAT
GGCTGGGATCTGCTTACTACTACTGACAAGTTACCACAATAACAAGAGTTATCTGGCACAAATTACAGCC
CGACTTCCTCTACTAGAACAACAGGGCCGGGCGCTGAACAAACCATCAGCTCGCGATCTACCACACTTGA
TCCAGTATTTGACACAGCTACAGTCACTGACAACTAATCAGCAAATTAATCCAGACAGTCCGCCACTTGT
TTACGGTATGGGATTATATCAAGGCCCGCAACTGAACAGTGCCAGCTATCCCGTTTATCAGCATGCGTTA
AAGAATTTATTGCTGCCTCTGGTGACACAGCAAGTCGAGAGTATTCTGCGTCAGCAAGCTGATAGCAATA
ACAGTGAATCAACTTACGAAGCACTGAAAGCCTACCAAATGCTATTTCAGACACAACATTACGATGGCAA
ATTCCTTACCGCTTGGCTGATGTTGAATCTGTCTCATATTCCCAGTGGTGAAAAGTTGAATGAGGCACAA
CGTCAAGCACTTCAGGAACATCTTTATCAGCTACTGAATCACAGTCAACCTTCCTGGTCTCAACACAAGG
ACCAACAGCTGATACAGGAAGCGATAAAAAATATCATGCGTTCTACGTTTTCCCAGCGGGTTTATACCAG
CATAAAAAAAAGGCTGATCAATAGCGGACGTTTCAAATCCGTCAATCTGCTTGATTTGGCGGGTTCTCAG
GCTGAGTTGGTATTAAAACGTAAAAGCGACCTGCCAGATACTGCGGCGATCCCCGGCTTTTTTACACCAG
ACGGATATTGGCACGGTCTGGTTGCACAGGTCGATGATACGGTAAAGACACTTCATGATACTGATCGCTG
GGTACTCAATATTCCGCCACAGGTACAGGAAGGGTGCGACGCTGCCTGCCGAGTACGCCAGCTTTATATG
GATGACTTTATGTTGGAGTGGGATACATTTCTCAATGATATCGCTCTAATCCCGACAAGTAGCCTCAACC
AGCGTATTAATAATGTGCGTATTCTCTCTGGCGCCCACTCGCCCCTGCGTAATCTGCTAATTGGCATCAG
CCACATTGTTGCATTATCTCCACCCGAAGATCATGGCAAACTCACGCAGCTGGGCCAGCAACTGAACGAT
GAAGCCTCTCGAAAATTACAAAATCTGTTTCCGGCGGTCAGAACTACCCCAGCGCCACCTTCACCAGAAC
AGATTGTTAGAAGTCACTATCGTGATCTGCTCGATCTGGCACGTCCACAGGGAAATAACAGTGACGCGAT
CGCCTTTGATGATCTGTTCAAGAAACTGGGGGACTTGTATCGCTACCTTACCGCCTTACAGGAAAATGGT
GAAGCGACAGCCTCCTCTTCGGGTACCATACTGACACAATTACAGGCTGATGCCGGCCGCCTGCCTGCTC
CGTTCCGCAGCATTATCATGGACATGACGCAGGGGGCCAAAGGCGACACGCAACAACAGGCAGTTTCGCG
CATACACCAATTGGCCAATGCTCAGTTAAGTGACTTCTGCCGTGAGGCCATTGCCGGACGTTATCCGCTT
TCCCGCCACAGCAAACGTGATATGACTCCCGACGATATGGCACATATGTTTGCGCCGAATCAGGGGTTAA
TGGATCGCTTTTTTAATCAATATCTGGTGGATAAGGTCAACACCCAAGGCAACGAATGGCGCTTTTTCCC
CTGGGCACTAGGCAGTACCAAGCCAGAAGATCAGTCACTGCTAAAAACATTCCGGCAAGCGCAGTTTGTC
CGTGATGCATTTTTTGGTACCGCCTCTTCACAACCCTCTTTCTCCCTTACCTTGCAACCTCTGCGCATGG
ATAACGACATCCTTACCCTGTCGCTGACACTCAACGATCAAAATGCCAGTTACAGCCACGGTCCGCTGAC
ATCCTGGTACTTCACCTGGCCCGGTAGCAACAATGCCGGTAAAGCCAAACTGACCATGCTGTTGGCTAAT
GGCAAAACCAAATCACTGGAAACTTCAGGGCCTTGGGCATTAAACAGGCTGATTGATGCAGGAAAATGGT
TTCAGGAGGACAGCATGCATTATCGAATCACTTTCAATCTGGCAGGGCACCAAGCCACGCTGATACTCAC
CCCCGATAGCATACACAACCCGTTTGTTCTGCCGGAATTTACTTGTATCAAACCATAA
 Primer design