SecReT6
Protein ID: 27366867
SecReT6 ID38
T6SS typei5
Gene symbolclpV
Locus tagVV2_0430
StrainVibrio vulnificus CMCP6
Repliconchromosome II [GenBank: NC_004460] [Browse all T6SS(s) in this replicon]
Location [Strand]463135..465699 [-]
Producttype VI secretion ATPase, ClpV1 family
NoteTssH
UniProt IDQ8D6U5
KEGG IDvvu:VV2_0430
PDB IDNA
Domain hit(s) vs Pfam AAA_2 [PF07724], Evalue: 2.70E-40, Aligned region: 213..230
AAA_2 [PF07724], Evalue: 2.70E-40, Aligned region: 587..754
AAA [PF00004], Evalue: 5.60E-20, Aligned region: 212..325
AAA [PF00004], Evalue: 5.60E-20, Aligned region: 592..710
AAA_16 [PF13191], Evalue: 6.80E-13, Aligned region: 189..234
AAA_16 [PF13191], Evalue: 6.80E-13, Aligned region: 256..290
AAA_16 [PF13191], Evalue: 6.80E-13, Aligned region: 466..511
AAA_16 [PF13191], Evalue: 6.80E-13, Aligned region: 560..615
AAA_16 [PF13191], Evalue: 6.80E-13, Aligned region: 656..684
AAA_16 [PF13191], Evalue: 6.80E-13, Aligned region: 718..743
AAA_5 [PF07728], Evalue: 1.80E-11, Aligned region: 212..236
AAA_5 [PF07728], Evalue: 1.80E-11, Aligned region: 591..714
ClpB_D2-small [PF10431], Evalue: 5.50E-11, Aligned region: 541..559
ClpB_D2-small [PF10431], Evalue: 5.50E-11, Aligned region: 759..833
AAA_22 [PF13401], Evalue: 8.60E-09, Aligned region: 211..293
AAA_22 [PF13401], Evalue: 8.60E-09, Aligned region: 324..362
AAA_22 [PF13401], Evalue: 8.60E-09, Aligned region: 588..629
Sigma54_activat [PF00158], Evalue: 2.80E-07, Aligned region: 209..227
Sigma54_activat [PF00158], Evalue: 2.80E-07, Aligned region: 572..710
IstB_IS21 [PF01695], Evalue: 2.60E-06, Aligned region: 206..234
IstB_IS21 [PF01695], Evalue: 2.60E-06, Aligned region: 591..621
IstB_IS21 [PF01695], Evalue: 2.60E-06, Aligned region: 701..725
Arch_ATPase [PF01637], Evalue: 2.90E-06, Aligned region: 191..226
Arch_ATPase [PF01637], Evalue: 2.90E-06, Aligned region: 264..361
Arch_ATPase [PF01637], Evalue: 2.90E-06, Aligned region: 584..630
Arch_ATPase [PF01637], Evalue: 2.90E-06, Aligned region: 764..817
AAA_14 [PF13173], Evalue: 1.90E-05, Aligned region: 212..327
AAA_14 [PF13173], Evalue: 1.90E-05, Aligned region: 589..685
AAA_25 [PF13481], Evalue: 6.90E-05, Aligned region: 212..283
AAA_25 [PF13481], Evalue: 6.90E-05, Aligned region: 587..612
AAA_25 [PF13481], Evalue: 6.90E-05, Aligned region: 654..675
AAA_19 [PF13245], Evalue: 7.40E-05, Aligned region: 212..233
AAA_19 [PF13245], Evalue: 7.40E-05, Aligned region: 587..616
NACHT [PF05729], Evalue: 8.10E-05, Aligned region: 212..239
NACHT [PF05729], Evalue: 8.10E-05, Aligned region: 592..612
Zeta_toxin [PF06414], Evalue: 0.00011, Aligned region: 212..233
Zeta_toxin [PF06414], Evalue: 0.00011, Aligned region: 582..632
AAA_17 [PF13207], Evalue: 0.001, Aligned region: 212..248
AAA_17 [PF13207], Evalue: 0.001, Aligned region: 591..629
RNA_helicase [PF00910], Evalue: 0.0017, Aligned region: 213..233
RNA_helicase [PF00910], Evalue: 0.0017, Aligned region: 482..523
RNA_helicase [PF00910], Evalue: 0.0017, Aligned region: 592..615
RNA_helicase [PF00910], Evalue: 0.0017, Aligned region: 692..709
AAA_29 [PF13555], Evalue: 0.0028, Aligned region: 204..228
AAA_29 [PF13555], Evalue: 0.0028, Aligned region: 586..602
AAA_18 [PF13238], Evalue: 0.0041, Aligned region: 132..157
AAA_18 [PF13238], Evalue: 0.0041, Aligned region: 212..235
AAA_18 [PF13238], Evalue: 0.0041, Aligned region: 592..620
AAA_23 [PF13476], Evalue: 0.0044, Aligned region: 212..229
AAA_23 [PF13476], Evalue: 0.0044, Aligned region: 428..510
AAA_23 [PF13476], Evalue: 0.0044, Aligned region: 588..782
DUF258 [PF03193], Evalue: 0.0046, Aligned region: 207..230
DUF258 [PF03193], Evalue: 0.0046, Aligned region: 578..602
RuvB_N [PF05496], Evalue: 0.0082, Aligned region: 212..229
RuvB_N [PF05496], Evalue: 0.0082, Aligned region: 283..292
RuvB_N [PF05496], Evalue: 0.0082, Aligned region: 552..612
RuvB_N [PF05496], Evalue: 0.0082, Aligned region: 659..685
NTPase_1 [PF03266], Evalue: 0.0083, Aligned region: 212..233
NTPase_1 [PF03266], Evalue: 0.0083, Aligned region: 591..618
Protein Sequence: 854 a.a.     [Download]
>gi|27366867|ref|NP_762394.1| type VI secretion ATPase, ClpV1 family [Vibrio vulnificus CMCP6]
MASLSLSALVDKLTPEAKRALEQAAALASSRTHHSIEMTHWLLTLVQSAGPEEIELYRSFKVDLNQLQTD
LTLQLEKYKTGCQTVPGLSSHTVTILQNAWMTATIAFEAEKIAAVHLLHAFLSDDTLFALSSTVSKELSK
IQPSALIEYAQTHVEMANQIPNHRASTQALDQFTIDLTEQAELGQIDPVIGRDDEIRLMTDILLRRRQNN
PILTGEAGVGKTAVVEGLALKIAEGDVPPALKAVRIKSLDLALLQAGAGMKGEFENRLKNVVKEVKESAV
PIVLFIDEAHGLIGGGAQAGQGDAANILKPALARGELRTIAATTWAEYKKYVEKDAALTRRFQVVKIEEP
SPELAIEMLRGLVPVMEKHHGVHITTEALKAAVFLSSRYISGRQLPDKAVSVLDTACSRVALSQNSIPGL
LDQKYKKRQMIEAQQLQLTNELAFGHSHQTALDELESKLSLLQNEIHQLETTWRDEEGAVKQAKALRDSI
LAEPSAEKANQLQSIEQQLSSNPMPLVFSHVNEALIAEIIAGWTGIPLGKLKSDEIKAILDLQQHLQERV
VGQDHALSKMAEVIKTARAQLNEESKPNGIFFLVGPSGVGKTESALAIAEQVYGSEENITVINMSEFKEE
HKVSLLLGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEMEKAHPGVQDIFYQVFDKGMIKDGEGRDIDFK
NTIIIMTSNSGTETTMELFQDPELAPDPEALKEALRDDLLQDFKPAFLGRVNVIPYIPLHRDVLEKITAL
KLSKIQKRIKTNYKAEAVINDRLINSIVDSCNETGSGARALQNVIENKVLPKISESVLNAILNDIRINKI
EIEGEVDDLSISIV
 
Nucleotide Sequence: 2565 bp     [Download]
>gi|326424156|ref|NC_004460.2|:c465699-463135 Vibrio vulnificus CMCP6 chromosome II, complete sequence
ATGGCATCTCTTTCACTATCCGCGTTAGTTGACAAGTTAACCCCTGAAGCGAAAAGAGCATTAGAGCAAG
CCGCTGCTTTGGCGAGCTCAAGAACTCACCACAGCATTGAAATGACACATTGGCTGCTTACGCTAGTGCA
AAGTGCTGGGCCTGAAGAAATCGAACTGTATCGCTCGTTTAAGGTTGATCTGAACCAATTGCAGACGGAT
CTCACTTTGCAATTAGAGAAGTACAAAACGGGCTGTCAAACTGTACCGGGGTTGTCATCCCATACGGTCA
CCATACTACAGAATGCATGGATGACAGCGACGATTGCGTTTGAAGCAGAAAAAATTGCTGCTGTTCATTT
GCTTCATGCCTTCCTCTCTGACGACACGTTGTTTGCTCTATCTTCGACTGTGAGCAAAGAGCTAAGCAAA
ATTCAGCCTAGTGCGCTAATCGAATACGCACAGACTCATGTTGAAATGGCTAATCAAATTCCCAACCACA
GAGCTTCTACACAAGCGTTGGATCAATTTACGATAGATCTGACAGAGCAAGCGGAGTTGGGGCAAATTGA
TCCGGTGATTGGCAGAGATGATGAAATTCGTCTGATGACGGATATTCTTCTGCGACGCCGTCAAAATAAC
CCTATCCTGACGGGTGAGGCGGGGGTAGGTAAAACCGCCGTTGTCGAAGGACTTGCGCTAAAAATCGCTG
AAGGGGATGTGCCTCCCGCGCTTAAAGCAGTGAGAATTAAATCGCTTGATTTGGCGCTACTCCAGGCCGG
TGCTGGTATGAAGGGCGAGTTTGAAAATCGATTGAAGAACGTGGTCAAAGAAGTCAAAGAGTCAGCGGTG
CCTATCGTACTGTTTATCGATGAAGCGCATGGATTGATTGGTGGAGGGGCGCAGGCTGGTCAAGGTGATG
CTGCGAACATACTTAAGCCCGCCTTAGCCAGGGGGGAGCTACGCACGATCGCCGCAACCACATGGGCTGA
ATACAAAAAATATGTAGAGAAAGACGCAGCTCTGACCCGTCGTTTTCAAGTGGTTAAAATAGAGGAACCT
TCACCTGAATTGGCGATAGAGATGCTGCGTGGCCTCGTTCCTGTCATGGAAAAACATCATGGCGTCCACA
TTACTACCGAGGCACTCAAGGCTGCCGTCTTTCTTTCTTCTCGCTACATTAGCGGCCGTCAGTTGCCAGA
CAAGGCGGTATCGGTTTTAGATACCGCGTGCTCTCGTGTTGCTTTGAGTCAAAACTCGATACCAGGGCTG
CTTGATCAGAAATACAAAAAACGCCAAATGATAGAAGCTCAACAGCTTCAGCTCACCAATGAACTTGCAT
TTGGTCATTCTCATCAAACAGCTCTTGACGAACTTGAGAGCAAGTTGTCGCTCCTTCAAAATGAAATTCA
CCAACTAGAGACAACGTGGCGAGATGAAGAAGGCGCAGTCAAGCAGGCCAAAGCGCTCCGTGATTCCATT
TTGGCAGAACCATCTGCAGAGAAAGCCAATCAGCTGCAATCCATTGAACAGCAGTTATCGTCTAACCCGA
TGCCTTTGGTGTTTTCGCATGTTAACGAAGCCCTAATTGCTGAAATTATTGCAGGCTGGACAGGCATACC
ATTAGGCAAACTAAAAAGCGATGAAATAAAAGCGATTCTAGACTTACAGCAACATCTGCAAGAGCGAGTG
GTCGGCCAAGATCACGCGTTGAGTAAAATGGCGGAAGTGATCAAAACCGCGAGAGCACAACTCAATGAAG
AATCAAAACCTAACGGTATCTTTTTCTTGGTAGGCCCAAGTGGTGTCGGTAAAACGGAATCTGCGTTGGC
CATTGCTGAGCAAGTGTATGGTAGTGAAGAAAACATCACCGTCATTAACATGTCTGAATTTAAAGAAGAG
CATAAAGTCTCGTTACTGCTGGGCTCTCCTCCGGGCTACGTTGGGTATGGCGAAGGTGGTGTGCTAACGG
AAGCCGTAAGAAGAAAACCTTACAGCGTCATATTGCTTGATGAAATGGAGAAAGCCCATCCGGGTGTACA
GGATATTTTCTATCAAGTGTTTGATAAGGGCATGATTAAAGACGGTGAAGGGCGAGACATCGATTTCAAA
AACACCATCATTATCATGACTTCCAACTCTGGGACGGAAACAACAATGGAGTTATTCCAAGATCCAGAGC
TTGCTCCGGATCCGGAGGCACTCAAAGAAGCGCTACGAGATGATTTATTACAGGATTTCAAGCCCGCTTT
TTTAGGTCGAGTGAATGTCATTCCTTATATCCCTTTGCACCGTGATGTATTGGAGAAAATCACCGCGCTG
AAACTCTCCAAAATTCAGAAGAGGATAAAAACAAACTATAAAGCAGAAGCGGTGATCAACGATCGCTTAA
TTAATAGTATTGTTGACAGCTGCAATGAAACGGGCAGTGGCGCGCGTGCTCTTCAAAATGTGATTGAAAA
TAAGGTGCTGCCTAAAATATCTGAATCCGTATTAAATGCCATTCTTAATGATATAAGAATAAATAAAATT
GAGATAGAAGGTGAAGTTGATGACTTGTCTATCTCAATCGTCTAA
 Primer design