| Protein ID: 339487748 |
 SecReT6 ID | 451 |
| T6SS type | i4b |
| Gene symbol | - |
| Locus tag | PPS_2845 |
| Strain | Pseudomonas putida S16 |
| Replicon | chromosome [GenBank: NC_015733] [Browse all T6SS(s) in this replicon] |
| Location [Strand] | 3164372..3168175 [+] |
| Product | ImcF domain-containing protein |
| Note | TssM |
| UniProt ID | F8FXN2 |
| KEGG ID | ppt:PPS_2845 |
| PDB ID | NA |
| Domain hit(s) vs Pfam | ImcF-related_N [PF14331], Evalue: 4.00E-60, Aligned region: 181..435 IcmF-related [PF06761], Evalue: 2.00E-45, Aligned region: 491..555 IcmF-related [PF06761], Evalue: 2.00E-45, Aligned region: 635..878 DUF1215 [PF06744], Evalue: 4.00E-23, Aligned region: 317..343 DUF1215 [PF06744], Evalue: 4.00E-23, Aligned region: 780..821 DUF1215 [PF06744], Evalue: 4.00E-23, Aligned region: 1011..1126 AAA_16 [PF13191], Evalue: 0.00031, Aligned region: 112..258 AAA_16 [PF13191], Evalue: 0.00031, Aligned region: 460..475 AAA_16 [PF13191], Evalue: 0.00031, Aligned region: 870..939 |
| Protein Sequence: 1267 a.a. [Download] |
| >gi|339487748|ref|YP_004702276.1| unnamed protein product [Pseudomonas putida S16] MKTLLRLLKNFWFLLLLLWLASLLTCWLVAPLLPWLQQHLPEALAIISACFLLVIVLRQYQRIRAEHNLE NLLQIEVDRSWNATGEFRDQQVLRERLKHAIAMLRTDRSAGGGGKAALSDLPWYLVVGMSAAGKTSLLTH SGLSASIATANDSESGTQHCDWYFSPDAVMIDTAGRYLRDDQSASEFSAFLRMLRKQRGKAAINGLVMVV SLPELLAANSDERNALAAQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTF GLSEIRNNGLHAVLQTRLGNLQNHIRQHVDAQVIALGAEADSTLLNFPQYFAALSGVLEQFLEHFTRGHR GGAPLLLRGLYFTSALQTGQQLGQVYEDVIADEFALQAAYDEHAENVGKAAGNRSYFITDTFRQVIFPDR DLTLYQSRLGRQAAFSPLLLGLAAATGLLFIGWQALSFTNNRQWLDSLRGQLAQIEQAEDREQQLAAGKG LEVLREQMARVENHRLQGVPLQLGGGLYHGEAIHQVTRTAYLAQLRSQALEPIARSLQVQMRAFNTFANG INQELEFTPAPTPKKRNGKPLAPAIAAKAQAALGNSRAGAYAAKVNLATASDAAELSATTGGLSLSEEML GRLDEQQVASIIDAYNTLKLYLLLTEPQGHPDPAFVAANLPQAWTNAATEGTPADAAVIAENAPLYVQLL EQGQAPSLPRNEQLINETRQNLKSFMISSSLVDREYLRLQLESSRQFPALSLNDLVPQPGRALLYGSAGV PAIYTRQGWDTFVKPELIKLVSGNLRNESDWVLDGEGGDAIVQKANFVREFMTRYKRDYTQAWYKMVSSV GVRHFADLASATQQLGLLSDVQNSPVKNLLAAVNDNTQWDLPAKHAIPALGSTREDGFWSKVSGLFDDKD ALPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAALRKLKVRMNNIQRSQDVGKSSK QLISETLEGQPSEVTTVRNYVESSVDTSQDGLSRSLQGLFSLPIQYAWATLRDPAGQQIAKAWAQQIAKP WEQVMAHRYPIAGSSRNEASVKDLQRFVDPDSGLLPAFKRNEIGNLAGGEGLGVGDGKAPALVNPGMLNS IDKASSVGQVIASLSDRDNGFEIMLEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSNAPGARLDV VTLSGARVTVFDFPGRWGLLRMNESARVEDLDGIQQRFSWNTASGRVSLVVRNFGGVKLTDLGDVKALSA LNDRGAQ |
| Nucleotide Sequence: 3804 bp [Download] |
| >gi|339484941|ref|NC_015733.1|:3164372-3168175 Pseudomonas putida S16 chromosome, complete genome ATGAAAACATTATTGCGCCTTTTGAAGAATTTCTGGTTTCTCCTGCTGCTGCTGTGGCTGGCGAGCCTGT TGACCTGCTGGTTGGTCGCCCCGTTGCTGCCATGGCTGCAACAGCACCTGCCCGAAGCACTGGCAATCAT CAGCGCCTGCTTCCTGCTGGTGATCGTGCTGCGCCAATACCAGCGCATTCGCGCCGAGCACAACCTGGAG AACCTGCTGCAGATCGAGGTTGATCGCTCGTGGAATGCCACTGGCGAGTTCCGTGACCAGCAGGTGCTGC GCGAACGCCTCAAGCATGCCATTGCCATGTTGCGCACCGACCGCTCCGCTGGAGGCGGTGGCAAGGCGGC ACTGTCCGATTTGCCCTGGTACCTGGTGGTTGGCATGTCGGCAGCCGGCAAGACCTCGCTGCTGACCCAT TCCGGCCTGTCGGCCAGCATTGCCACGGCCAACGACAGCGAAAGCGGCACCCAGCACTGCGACTGGTACT TCAGCCCCGACGCGGTAATGATCGACACCGCCGGCCGCTATTTGCGTGATGACCAGTCGGCCAGCGAGTT CTCGGCCTTCCTGCGCATGCTGCGCAAGCAGCGCGGCAAGGCAGCGATCAATGGCCTGGTAATGGTGGTC AGCCTGCCCGAGCTGCTGGCGGCCAACAGCGACGAACGCAATGCCCTGGCGGCCCAGCTGGTGGCGCGGG TGGAAGAGTATGCCGAGTGCCTCGACGCCAACCCGCCGGTCTACCTGATGCTGAGCAAGACCGACCAGTT GCCGGGCTTCAGCCAGGCGTTCGACGGCCTCGATCTGCATGAACGCCAGCAACCGCTGGGCATGACCTTC GGCCTGTCGGAAATCCGCAACAACGGCCTGCACGCCGTGCTGCAGACGCGCCTGGGCAACCTGCAGAACC ACATTCGCCAGCATGTCGACGCGCAGGTGATCGCCCTCGGTGCCGAAGCCGACAGCACCCTGTTGAACTT CCCGCAATACTTCGCCGCACTCAGCGGTGTCCTCGAGCAGTTCCTGGAGCACTTCACCCGCGGCCATCGC GGCGGTGCCCCGCTGCTGCTGCGCGGCTTGTACTTCACCAGTGCCCTGCAGACCGGGCAGCAGCTGGGCC AGGTATACGAAGACGTCATCGCCGACGAATTCGCCCTGCAAGCCGCCTACGATGAGCACGCCGAGAACGT CGGCAAGGCCGCGGGCAACCGCAGCTACTTCATCACCGACACCTTCCGCCAGGTGATATTCCCCGATCGC GACCTGACCCTGTACCAGTCGCGCCTGGGCCGCCAGGCTGCGTTCAGCCCGCTGCTGCTGGGCCTGGCCG CCGCCACCGGGTTGCTGTTCATCGGTTGGCAGGCACTGTCGTTCACCAATAACCGCCAATGGCTGGACAG CCTGCGCGGGCAGCTGGCGCAGATCGAGCAGGCAGAAGACCGCGAGCAGCAGCTGGCCGCTGGCAAGGGC CTGGAAGTGCTGCGCGAACAGATGGCCCGCGTCGAAAACCATCGCCTGCAGGGTGTACCACTGCAGTTGG GGGGTGGCCTGTACCATGGCGAAGCCATCCACCAGGTGACTCGCACCGCCTACCTGGCGCAACTGCGCAG CCAGGCGCTGGAGCCGATCGCACGCAGCCTGCAAGTGCAGATGCGGGCCTTCAACACCTTCGCCAACGGT ATCAACCAGGAGCTGGAATTCACCCCGGCCCCGACACCGAAAAAACGCAATGGCAAGCCGCTGGCCCCGG CCATTGCAGCCAAGGCCCAGGCTGCGCTGGGCAACAGCCGCGCCGGTGCCTATGCCGCCAAGGTCAACCT GGCCACCGCCAGCGATGCCGCCGAGCTGTCTGCCACCACCGGTGGCCTGTCACTGTCCGAAGAAATGCTC GGGCGCCTCGACGAACAGCAGGTGGCCTCGATCATCGATGCCTACAACACCCTCAAGCTGTACCTGTTGC TGACCGAGCCCCAAGGCCATCCGGACCCGGCCTTCGTCGCTGCCAACCTGCCCCAGGCCTGGACCAACGC CGCCACCGAAGGCACTCCGGCCGACGCAGCCGTGATCGCAGAAAATGCCCCGCTGTACGTACAGTTGCTG GAACAAGGCCAGGCGCCGTCGTTGCCGCGTAACGAACAGCTGATCAACGAAACCCGGCAAAACCTCAAGT CGTTCATGATCTCCAGCTCGCTGGTCGATCGCGAGTACCTGCGCCTGCAACTCGAGTCGAGCCGCCAGTT CCCGGCCCTGAGCCTGAACGACCTGGTGCCGCAACCGGGCCGCGCGTTGCTGTATGGCTCTGCTGGCGTA CCGGCAATCTATACCCGCCAGGGCTGGGATACCTTCGTCAAGCCGGAACTGATCAAGCTGGTGTCGGGCA ACCTGCGCAACGAGTCGGACTGGGTGCTGGACGGTGAAGGTGGCGATGCCATCGTGCAAAAGGCCAACTT CGTGCGCGAGTTCATGACCCGCTACAAACGCGACTACACCCAGGCCTGGTACAAGATGGTCAGCAGCGTG GGGGTACGCCACTTCGCCGACCTGGCCTCGGCCACCCAGCAGCTGGGGCTGCTCAGCGATGTGCAGAACT CGCCGGTAAAGAACCTGCTGGCTGCGGTCAATGACAACACCCAGTGGGACCTGCCGGCCAAGCACGCTAT CCCGGCCCTCGGTAGTACCCGCGAAGACGGCTTCTGGAGCAAGGTCTCCGGCCTGTTCGACGACAAGGAC GCCCTGCCCGCCAACGTCGCCCCGGCCCTGCCGGCGGTGGACGACGGCAGCCTGGCCAAGCGCTTCGAAC CGGTGGCGCGAGTATTTGCCGAAAACAACGCCGAAGGCGCCGACAGCACCATCATGGACCGCTACCTGGC CGCCTTGCGCAAGCTCAAGGTGCGCATGAACAACATCCAGCGTTCGCAGGATGTGGGCAAGAGCAGCAAG CAGCTGATCAGCGAGACCCTGGAAGGCCAGCCGAGCGAAGTCACCACCGTACGCAACTATGTGGAAAGCA GCGTCGACACCAGCCAGGACGGCCTGTCGCGCTCGCTGCAGGGGCTGTTCAGCCTGCCTATCCAGTATGC CTGGGCGACCCTGCGCGACCCGGCCGGCCAGCAGATCGCCAAGGCCTGGGCGCAGCAGATCGCCAAGCCT TGGGAACAGGTCATGGCGCACCGCTACCCGATTGCCGGCAGCAGCCGCAACGAGGCGTCGGTAAAGGACC TGCAGCGCTTCGTCGACCCCGACAGCGGCCTGCTGCCGGCCTTCAAGCGCAACGAAATCGGCAACCTGGC CGGGGGTGAAGGCCTGGGTGTGGGCGACGGCAAGGCACCGGCGCTGGTCAACCCAGGCATGCTCAACAGC ATCGACAAGGCCAGCTCCGTGGGCCAGGTGATCGCCAGCCTGTCGGACCGTGACAACGGCTTCGAAATCA TGCTGGAACCTTCTGCCAACTTCACCGACATCGTGTTCACCCTCGATGGCCAGGAACAGCACTACCGCAA CGGCCGCAGTAGCTGGAACCGCTTCGCCTGGCCGGGCACCAGCAACGCTCCGGGTGCCCGCCTGGATGTG GTCACCCTCAGTGGCGCGCGGGTCACCGTGTTCGACTTCCCCGGGCGCTGGGGCCTGCTGCGCATGAACG AAAGCGCCCGGGTCGAGGACCTGGACGGCATTCAGCAACGCTTCAGCTGGAACACCGCCAGCGGCCGCGT GAGCCTTGTAGTGCGTAACTTCGGTGGGGTGAAACTGACCGACCTGGGTGATGTCAAGGCGCTGAGCGCC CTCAACGACAGGGGCGCCCAATGA |
 Primer design |