SecReT6
Protein ID: 378950327
SecReT6 ID539
T6SS typei4a
Gene symbolclpB
Locus tagPSF113_2411
StrainPseudomonas fluorescens F113
Repliconchromosome [GenBank: NC_016830] [Browse all T6SS(s) in this replicon]
Location [Strand]2810386..2812929 [-]
Productchaperone ClpB
NoteTssH
UniProt IDG8QBH3
KEGG IDpfe:PSF113_2411
PDB IDNA
Domain hit(s) vs Pfam AAA_2 [PF07724], Evalue: 2.90E-37, Aligned region: 218..294
AAA_2 [PF07724], Evalue: 2.90E-37, Aligned region: 609..773
AAA [PF00004], Evalue: 1.60E-20, Aligned region: 218..329
AAA [PF00004], Evalue: 1.60E-20, Aligned region: 615..722
AAA_5 [PF07728], Evalue: 6.30E-15, Aligned region: 218..238
AAA_5 [PF07728], Evalue: 6.30E-15, Aligned region: 614..732
AAA_16 [PF13191], Evalue: 4.50E-12, Aligned region: 195..238
AAA_16 [PF13191], Evalue: 4.50E-12, Aligned region: 262..296
AAA_16 [PF13191], Evalue: 4.50E-12, Aligned region: 479..545
AAA_16 [PF13191], Evalue: 4.50E-12, Aligned region: 603..655
AAA_16 [PF13191], Evalue: 4.50E-12, Aligned region: 679..708
Clp_N [PF02861], Evalue: 1.30E-10, Aligned region: 21..72
Clp_N [PF02861], Evalue: 1.30E-10, Aligned region: 110..122
AAA_22 [PF13401], Evalue: 4.30E-10, Aligned region: 218..299
AAA_22 [PF13401], Evalue: 4.30E-10, Aligned region: 334..390
AAA_22 [PF13401], Evalue: 4.30E-10, Aligned region: 612..717
AAA_17 [PF13207], Evalue: 1.10E-06, Aligned region: 218..267
AAA_17 [PF13207], Evalue: 1.10E-06, Aligned region: 497..497
AAA_17 [PF13207], Evalue: 1.10E-06, Aligned region: 613..651
Zeta_toxin [PF06414], Evalue: 1.40E-06, Aligned region: 218..238
Zeta_toxin [PF06414], Evalue: 1.40E-06, Aligned region: 605..654
AAA_14 [PF13173], Evalue: 3.10E-06, Aligned region: 218..298
AAA_14 [PF13173], Evalue: 3.10E-06, Aligned region: 580..597
AAA_14 [PF13173], Evalue: 3.10E-06, Aligned region: 613..703
AAA_25 [PF13481], Evalue: 1.50E-05, Aligned region: 218..242
AAA_25 [PF13481], Evalue: 1.50E-05, Aligned region: 272..315
AAA_25 [PF13481], Evalue: 1.50E-05, Aligned region: 485..520
AAA_25 [PF13481], Evalue: 1.50E-05, Aligned region: 612..639
IstB_IS21 [PF01695], Evalue: 2.80E-05, Aligned region: 212..237
IstB_IS21 [PF01695], Evalue: 2.80E-05, Aligned region: 614..634
Sigma54_activat [PF00158], Evalue: 6.80E-05, Aligned region: 218..233
Sigma54_activat [PF00158], Evalue: 6.80E-05, Aligned region: 613..713
ClpB_D2-small [PF10431], Evalue: 7.20E-05, Aligned region: 779..846
FtsK_SpoIIIE [PF01580], Evalue: 8.10E-05, Aligned region: 211..259
FtsK_SpoIIIE [PF01580], Evalue: 8.10E-05, Aligned region: 431..513
FtsK_SpoIIIE [PF01580], Evalue: 8.10E-05, Aligned region: 614..635
AAA_19 [PF13245], Evalue: 0.00012, Aligned region: 215..240
AAA_19 [PF13245], Evalue: 0.00012, Aligned region: 585..599
AAA_19 [PF13245], Evalue: 0.00012, Aligned region: 612..636
AAA_18 [PF13238], Evalue: 0.00014, Aligned region: 218..238
AAA_18 [PF13238], Evalue: 0.00014, Aligned region: 466..507
AAA_18 [PF13238], Evalue: 0.00014, Aligned region: 615..649
AAA_28 [PF13521], Evalue: 0.00023, Aligned region: 218..293
AAA_28 [PF13521], Evalue: 0.00023, Aligned region: 614..634
ResIII [PF04851], Evalue: 0.00031, Aligned region: 209..238
ResIII [PF04851], Evalue: 0.00031, Aligned region: 284..299
ResIII [PF04851], Evalue: 0.00031, Aligned region: 589..636
NACHT [PF05729], Evalue: 0.0005, Aligned region: 218..245
NACHT [PF05729], Evalue: 0.0005, Aligned region: 614..639
AAA_29 [PF13555], Evalue: 0.001, Aligned region: 210..234
AAA_29 [PF13555], Evalue: 0.001, Aligned region: 610..639
RNA_helicase [PF00910], Evalue: 0.0013, Aligned region: 219..239
RNA_helicase [PF00910], Evalue: 0.0013, Aligned region: 615..636
SRP54 [PF00448], Evalue: 0.0017, Aligned region: 218..238
SRP54 [PF00448], Evalue: 0.0017, Aligned region: 613..643
T2SE [PF00437], Evalue: 0.0018, Aligned region: 204..234
T2SE [PF00437], Evalue: 0.0018, Aligned region: 598..683
AAA_23 [PF13476], Evalue: 0.002, Aligned region: 218..235
AAA_23 [PF13476], Evalue: 0.002, Aligned region: 479..517
AAA_23 [PF13476], Evalue: 0.002, Aligned region: 612..640
Arch_ATPase [PF01637], Evalue: 0.0029, Aligned region: 196..232
Arch_ATPase [PF01637], Evalue: 0.0029, Aligned region: 270..304
Arch_ATPase [PF01637], Evalue: 0.0029, Aligned region: 613..655
Arch_ATPase [PF01637], Evalue: 0.0029, Aligned region: 681..709
AAA_33 [PF13671], Evalue: 0.0041, Aligned region: 218..235
AAA_33 [PF13671], Evalue: 0.0041, Aligned region: 613..635
Protein Sequence: 847 a.a.     [Download]
>gi|378950327|ref|YP_005207815.1| chaperone ClpB [Pseudomonas fluorescens F113]
MELASLIGRLNPDNRRALERAAQRCMQRSHHYVEIEHLLLELLDIEGGDFACLLPRFGLERDAVATETNK
ALDLFKSGSTRTPALSAQTIGLLEDAVVQASVLGLDSIRSGLLLLALLDRDERRSLLLNSASSLLRIPRD
ALRAHLLEWTESSREHVGGVRPTKPGEPPQKQDPVLDQYTQDLTADARAGRIDPIVGRDGEIRQCIDILL
RRRQNNPILVGAPGVGKTAVVEGLALRIAAGDVPPSLQEVTLRVLDLGLLQAGAGVKGEFEQRLKGVIDA
VRSAEKPIILFIDEAHTLIGAGGAEGGSDAANLLKPALARGELRTLAATTWLEYKKYFEKDPALARRFQL
VQVEEPDELTAVEMLRGVASKLEQHHGVQVLDAAIHEAVKLSHRYISGRQLPDKAISVLDTACARVALGQ
HDVPPPLESLRHRQNSLKDEVERLRREQATGLDHRERITLLEGESTSNVQAIRELETRWGEEREAVRELL
DTRRELLALSERADSEKADTEIDNRIDHLAAELLRLEAGLDAIRQDDPLVPEQVDSKTVAAVIAGWTGIP
VGKMLADEAHAVRTLGQRMGQRVMGQSTALNTIAQRLQAYRAGLTDPQKPVGVFLLVGPTGVGKTETAYA
LADALYGGERNLISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPDVL
EAFYNVFDKGLMEDGTGLVVDFKNTVMLATSNVGAELLLDTPTAQLGSDAFNEALHKVLLQAFRPAFLAR
MTVVAYRPLDEATLEGIVLAKLEKLRGRYKAATGKQFEFDAGIVKAVLAKCSAAGARDVENVLMTQVTGK
LAEWVLE
 
Nucleotide Sequence: 2544 bp     [Download]
>gi|378947941|ref|NC_016830.1|:c2812929-2810386 Pseudomonas fluorescens F113 chromosome, complete genome
ATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGCCGCGCCCTGGAACGGGCCGCGCAAC
GCTGCATGCAGCGCAGCCATCACTATGTGGAAATCGAACATCTGCTGTTGGAATTGCTCGACATCGAGGG
CGGCGACTTTGCCTGCCTGCTGCCGCGCTTCGGGCTGGAGCGTGACGCGGTGGCGACGGAAACCAACAAG
GCCCTGGACCTGTTCAAATCCGGCAGCACCCGCACGCCCGCCTTGTCGGCACAAACCATCGGCCTGTTGG
AAGACGCCGTGGTCCAGGCCAGTGTGCTGGGCCTGGACAGCATCCGCTCCGGGCTGTTGCTATTGGCGCT
GCTGGACCGTGATGAGCGCCGCAGCCTGCTGCTCAACAGTGCCTCGTCGTTGCTGCGCATTCCCCGCGAC
GCCCTGCGCGCCCACCTATTGGAGTGGACCGAAAGCTCCCGTGAACATGTCGGTGGCGTGCGCCCGACCA
AACCCGGCGAGCCACCCCAGAAACAAGACCCGGTGCTGGACCAGTACACCCAGGACCTGACAGCCGACGC
CCGGGCCGGGCGCATCGACCCCATCGTTGGCCGCGACGGCGAGATCCGCCAGTGCATCGACATCCTGCTC
CGGCGCCGGCAGAACAACCCGATCCTGGTCGGCGCACCGGGCGTCGGCAAGACTGCGGTGGTGGAAGGCC
TGGCCCTGCGTATCGCCGCCGGGGATGTGCCGCCGTCGTTGCAGGAAGTCACCCTGCGTGTCCTCGACCT
GGGCCTGTTGCAGGCCGGTGCCGGCGTCAAAGGTGAATTCGAACAGCGCCTCAAGGGTGTGATCGACGCG
GTACGCAGTGCCGAAAAGCCGATCATCCTGTTCATCGACGAAGCCCATACGCTGATCGGCGCCGGCGGTG
CGGAAGGCGGCAGCGATGCGGCCAACCTGCTCAAGCCCGCCCTGGCCCGGGGCGAACTGCGCACCCTGGC
CGCAACCACCTGGCTGGAATACAAAAAATATTTCGAGAAAGACCCGGCCCTGGCCCGCCGCTTCCAACTG
GTACAGGTCGAAGAACCGGACGAACTCACCGCCGTGGAAATGCTCCGGGGCGTGGCCAGCAAACTGGAAC
AGCACCACGGCGTGCAGGTGCTGGACGCGGCCATCCACGAGGCAGTGAAGCTGTCCCACCGCTACATCTC
CGGGCGACAGTTGCCGGACAAGGCCATCAGCGTGCTCGACACCGCCTGCGCCCGGGTCGCCCTCGGCCAG
CACGACGTACCGCCGCCGCTGGAAAGCCTGCGCCATCGGCAGAACAGCCTCAAGGACGAGGTCGAACGCC
TGCGCCGGGAACAGGCGACCGGGCTCGATCACCGCGAGCGCATAACCCTGCTCGAAGGCGAATCGACCAG
CAACGTGCAAGCCATCCGCGAACTGGAAACCCGCTGGGGCGAAGAGCGCGAAGCCGTGCGCGAACTGCTC
GACACCCGGCGCGAACTGCTTGCCCTGAGCGAACGCGCCGACAGTGAAAAAGCCGACACCGAGATCGATA
ACCGCATCGACCACCTGGCCGCCGAACTGCTGCGCCTGGAGGCGGGCCTGGATGCCATTCGCCAGGACGA
TCCGCTGGTGCCCGAACAAGTGGACAGCAAGACCGTCGCCGCCGTGATTGCCGGCTGGACCGGCATTCCG
GTCGGCAAGATGCTCGCCGACGAAGCCCACGCCGTGCGCACCCTCGGCCAGCGCATGGGCCAGCGGGTCA
TGGGCCAGAGCACCGCGCTGAACACCATCGCCCAACGCCTGCAAGCCTACCGCGCCGGCCTCACCGACCC
ACAGAAACCGGTTGGCGTGTTCCTGCTGGTGGGCCCCACCGGCGTGGGAAAGACCGAAACCGCCTACGCC
CTGGCCGACGCCTTGTACGGCGGTGAGCGCAACCTGATCAGCATCAACCTCTCGGAGTACCAGGAAGCCC
ACACCGTCAGCCAACTCAAAGGCGCCCCACCCGGCTACGTCGGCTACGGCAGCGGCGGTGTGCTCACCGA
AGCGGTACGGCGCAAACCCTATTCGGTGGTGCTGCTGGATGAAATCGAAAAGGCCCACCCGGATGTGCTT
GAAGCCTTCTACAACGTCTTCGACAAAGGCCTGATGGAAGACGGCACCGGCCTGGTGGTGGACTTCAAGA
ACACCGTGATGCTCGCCACCAGCAACGTCGGTGCCGAACTGTTGCTGGACACGCCGACCGCGCAACTGGG
CAGCGACGCCTTCAACGAAGCCTTGCACAAGGTGCTGCTGCAAGCGTTCCGTCCGGCATTTTTGGCACGC
ATGACCGTGGTGGCGTACCGGCCGCTGGATGAAGCGACGCTGGAGGGGATTGTGCTGGCGAAGCTGGAAA
AATTGCGCGGGCGCTACAAGGCCGCGACCGGCAAGCAGTTCGAGTTCGATGCGGGGATCGTCAAGGCTGT
GTTGGCCAAGTGCAGCGCGGCGGGAGCACGGGACGTCGAGAATGTGCTGATGACCCAAGTGACGGGGAAG
TTGGCGGAGTGGGTGTTGGAATGA
 Primer design