SecReT6
Protein ID: 386590157
SecReT6 ID621
T6SS typei3
Gene symbol-
Locus tagSU5_0914
StrainSalmonella enterica subsp. enterica serovar Heidelberg str. B182
Repliconchromosome [GenBank: NC_017623] [Browse all T6SS(s) in this replicon]
Location [Strand]1053635..1056274 [+]
ProductClpB protein
NoteTssH
UniProt IDI0A5M6
KEGG IDshb:SU5_0914
PDB IDNA
Domain hit(s) vs Pfam AAA_2 [PF07724], Evalue: 1.00E-39, Aligned region: 235..313
AAA_2 [PF07724], Evalue: 1.00E-39, Aligned region: 609..776
AAA [PF00004], Evalue: 3.40E-19, Aligned region: 236..368
AAA [PF00004], Evalue: 3.40E-19, Aligned region: 381..402
AAA [PF00004], Evalue: 3.40E-19, Aligned region: 615..699
AAA_5 [PF07728], Evalue: 1.10E-12, Aligned region: 236..313
AAA_5 [PF07728], Evalue: 1.10E-12, Aligned region: 614..732
ClpB_D2-small [PF10431], Evalue: 8.70E-12, Aligned region: 789..856
AAA_16 [PF13191], Evalue: 2.10E-10, Aligned region: 213..256
AAA_16 [PF13191], Evalue: 2.10E-10, Aligned region: 277..315
AAA_16 [PF13191], Evalue: 2.10E-10, Aligned region: 344..406
AAA_16 [PF13191], Evalue: 2.10E-10, Aligned region: 469..520
AAA_16 [PF13191], Evalue: 2.10E-10, Aligned region: 605..659
AAA_16 [PF13191], Evalue: 2.10E-10, Aligned region: 678..708
AAA_22 [PF13401], Evalue: 1.10E-07, Aligned region: 236..402
AAA_22 [PF13401], Evalue: 1.10E-07, Aligned region: 613..634
AAA_22 [PF13401], Evalue: 1.10E-07, Aligned region: 676..706
Sigma54_activat [PF00158], Evalue: 3.50E-06, Aligned region: 232..252
Sigma54_activat [PF00158], Evalue: 3.50E-06, Aligned region: 614..714
IstB_IS21 [PF01695], Evalue: 2.00E-05, Aligned region: 220..295
IstB_IS21 [PF01695], Evalue: 2.00E-05, Aligned region: 614..634
NACHT [PF05729], Evalue: 3.90E-05, Aligned region: 236..263
NACHT [PF05729], Evalue: 3.90E-05, Aligned region: 614..644
AAA_25 [PF13481], Evalue: 7.20E-05, Aligned region: 236..335
AAA_25 [PF13481], Evalue: 7.20E-05, Aligned region: 473..531
AAA_25 [PF13481], Evalue: 7.20E-05, Aligned region: 609..640
AAA_25 [PF13481], Evalue: 7.20E-05, Aligned region: 676..697
Zeta_toxin [PF06414], Evalue: 8.50E-05, Aligned region: 236..256
Zeta_toxin [PF06414], Evalue: 8.50E-05, Aligned region: 318..404
Zeta_toxin [PF06414], Evalue: 8.50E-05, Aligned region: 608..664
AAA_19 [PF13245], Evalue: 8.60E-05, Aligned region: 234..259
AAA_19 [PF13245], Evalue: 8.60E-05, Aligned region: 386..413
AAA_19 [PF13245], Evalue: 8.60E-05, Aligned region: 430..456
AAA_19 [PF13245], Evalue: 8.60E-05, Aligned region: 612..636
AAA_29 [PF13555], Evalue: 0.00036, Aligned region: 226..253
AAA_29 [PF13555], Evalue: 0.00036, Aligned region: 612..639
AAA_14 [PF13173], Evalue: 0.0014, Aligned region: 236..316
AAA_14 [PF13173], Evalue: 0.0014, Aligned region: 382..403
AAA_14 [PF13173], Evalue: 0.0014, Aligned region: 613..696
AAA_17 [PF13207], Evalue: 0.003, Aligned region: 237..248
AAA_17 [PF13207], Evalue: 0.003, Aligned region: 614..650
P33MONOX [PF15302], Evalue: 0.0043, Aligned region: 156..194
P33MONOX [PF15302], Evalue: 0.0043, Aligned region: 452..523
AAA_18 [PF13238], Evalue: 0.0048, Aligned region: 236..249
AAA_18 [PF13238], Evalue: 0.0048, Aligned region: 616..647
RNA_helicase [PF00910], Evalue: 0.0058, Aligned region: 189..210
RNA_helicase [PF00910], Evalue: 0.0058, Aligned region: 237..257
RNA_helicase [PF00910], Evalue: 0.0058, Aligned region: 615..636
Arch_ATPase [PF01637], Evalue: 0.0072, Aligned region: 215..251
Arch_ATPase [PF01637], Evalue: 0.0072, Aligned region: 290..318
Arch_ATPase [PF01637], Evalue: 0.0072, Aligned region: 381..409
Arch_ATPase [PF01637], Evalue: 0.0072, Aligned region: 613..628
Hpr_kinase_C [PF07475], Evalue: 0.0094, Aligned region: 236..247
Hpr_kinase_C [PF07475], Evalue: 0.0094, Aligned region: 612..633
Protein Sequence: 879 a.a.     [Download]
>gi|386590157|ref|YP_006086557.1| ClpB protein [Salmonella enterica subsp. enterica serovar Heidelberg str. B182]
METPVSRSALYGKLAGPLFRSLESATAFCKLRSNPWVELTHWLHQLTQQPDNDILHVLRHYQIPLSDVEK
ALLRQLDMLPAGASAISDFSHHIDLSVEKAWMLASVRYGDNKIRSGWLLLALLTTPELRRVLSSICAPLA
TLPVDELTEILPSLIETSPEAQERPYDGSGLASAIPGESSQAIPNGGQDGKSALAKYCQDMTAQARDGKI
DPVTGREHEIRTMTDILLRRRQNNPLLTGEAGVGKTAVVEGFALAIAQGEVPPALREVRLLALDVGALLA
GASMKGEFESRLKGLLEEAGRSPQPVILFVDEVHTLVGAGGASGTGDAANLLKPALARGTLRTIGATTWS
EYKRHIEKDPALTRRFQVLQIAEPEEIPAMEMVRGLVDTLEKHHNVLILDEAVRAAVQLSHRYIPARQLP
DKAISLLDTAAARVALTLHTPPASVQFLRQQLKAAEMERSLLQKQEKMGIQSDERRDALTARIFSLNNEL
TASESRWQRELELVHTLQELRVAESDADDKTTLQQAETALREWQGDAPVVFPEVSAAVVAAIVADWTGIP
AGRMVKDEASQVLELPARLAQRVTGQDGALAQIGERIQTARAGLGDPRKPVGVFMLAGPSGVGKTETALA
LAEAIYGGEQNLVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRHPWSVVLLDEIEKAHHDVH
ELFYQVFDKGGMEDGEGTHVDFKNTTLLLTTNVGSDLISQMCEDPALMPDATGLKEALMPELRKHFPAAF
LGRVTVIPYLPLDEPSRGVIARLHLDRLVARMGEQHGVTLTYSEELVAHIVACCPMHETGARLLIGYIEQ
HILPRLSRYWLQAMTEKAAIRQIDIGVNGDEQIVFEIVC
 
Nucleotide Sequence: 2640 bp     [Download]
>gi|386589256|ref|NC_017623.1|:1053635-1056274 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 chromosome, complete genome
ATGGAAACTCCTGTTTCACGCAGTGCGTTGTATGGAAAACTGGCCGGCCCACTATTCCGGTCGCTGGAAT
CGGCAACGGCATTTTGCAAACTACGCTCTAATCCCTGGGTTGAGCTGACTCACTGGCTGCACCAGTTAAC
ACAGCAGCCCGATAACGATATTCTCCACGTTCTTCGGCATTACCAGATCCCTCTTTCTGATGTGGAGAAA
GCGTTACTCCGGCAACTGGATATGCTGCCCGCCGGGGCCAGCGCCATTAGTGATTTTTCTCACCATATCG
ATCTCAGCGTTGAAAAGGCCTGGATGCTGGCGAGCGTCCGTTACGGCGATAACAAAATTCGCAGCGGCTG
GTTGCTGCTGGCCTTGTTGACCACGCCAGAACTGCGTCGGGTACTGAGCAGTATCTGCGCGCCGCTGGCC
ACGCTTCCGGTTGATGAACTGACGGAAATACTGCCCTCGTTGATCGAAACATCGCCGGAAGCGCAGGAGC
GCCCTTACGACGGCTCCGGCCTGGCATCAGCCATTCCCGGTGAAAGCAGTCAGGCGATTCCCAACGGCGG
GCAGGACGGTAAATCCGCGCTGGCAAAATACTGTCAGGACATGACGGCACAGGCGCGCGACGGCAAAATC
GACCCGGTGACGGGGCGTGAGCATGAAATCCGCACCATGACGGATATTCTGCTGCGCCGTCGCCAGAATA
ATCCACTACTGACTGGTGAGGCGGGCGTCGGGAAAACGGCGGTCGTCGAAGGTTTTGCCCTCGCGATTGC
GCAGGGGGAAGTGCCGCCCGCGCTGCGGGAAGTACGGCTACTGGCGCTGGACGTTGGCGCTCTGTTGGCC
GGAGCCAGCATGAAAGGCGAGTTTGAATCGCGTCTGAAAGGGTTACTGGAAGAGGCCGGGCGCTCGCCGC
AGCCGGTTATTCTGTTTGTCGATGAAGTTCACACTCTGGTGGGCGCGGGCGGCGCATCCGGCACGGGCGA
TGCCGCTAACCTGCTGAAACCGGCGCTGGCGCGCGGCACCCTGCGGACTATCGGCGCCACCACCTGGAGC
GAATACAAGCGCCATATTGAGAAAGATCCGGCGCTGACCCGGCGTTTTCAGGTGTTGCAGATTGCCGAAC
CGGAAGAGATCCCCGCAATGGAAATGGTGCGTGGTCTGGTGGATACGCTGGAAAAACACCATAACGTACT
GATTCTGGATGAGGCGGTACGTGCGGCGGTACAGCTTTCTCACCGCTACATTCCCGCCCGGCAGTTGCCG
GATAAGGCCATCAGCCTGCTGGATACCGCCGCGGCCCGCGTGGCGCTGACGCTGCACACGCCGCCTGCCA
GCGTACAGTTCCTGCGCCAGCAGCTAAAAGCGGCGGAAATGGAACGGTCGCTGTTGCAGAAGCAGGAAAA
AATGGGGATTCAGTCAGATGAGCGGCGCGATGCGCTGACGGCGCGAATTTTCTCGCTCAACAATGAACTG
ACTGCATCCGAATCTCGCTGGCAGCGGGAGCTGGAACTGGTACATACGTTGCAGGAACTGCGTGTCGCAG
AGTCTGATGCTGATGACAAAACCACGCTGCAACAGGCCGAAACGGCGCTAAGGGAGTGGCAGGGCGACGC
GCCGGTGGTGTTCCCGGAAGTCAGCGCGGCGGTTGTCGCGGCGATTGTCGCCGACTGGACCGGTATTCCT
GCCGGGCGCATGGTGAAAGATGAGGCCAGCCAGGTGCTGGAACTGCCTGCCCGACTGGCGCAACGCGTTA
CCGGGCAAGACGGCGCGCTGGCGCAGATTGGTGAACGTATTCAGACCGCCAGGGCGGGACTGGGCGATCC
ACGCAAACCGGTGGGCGTGTTTATGCTGGCCGGGCCGTCCGGTGTCGGTAAAACCGAAACCGCGCTGGCG
CTGGCGGAGGCTATCTACGGCGGTGAGCAGAACCTGGTAACCATCAATATGAGCGAGTTCCAGGAGGCTC
ACACCGTTTCCACGCTGAAAGGCGCGCCCCCCGGCTATGTGGGCTATGGCGAGGGTGGTGTGCTGACGGA
AGCAGTGCGTCGCCACCCCTGGAGCGTAGTGCTGCTCGACGAGATCGAAAAAGCGCACCATGACGTCCAT
GAACTCTTCTATCAGGTGTTTGACAAGGGCGGGATGGAGGACGGTGAGGGAACACATGTCGATTTCAAAA
ACACCACGCTATTACTCACCACCAACGTGGGTTCCGACCTCATCAGCCAGATGTGTGAAGATCCGGCCTT
AATGCCCGATGCTACGGGGCTTAAAGAGGCGCTAATGCCGGAATTGCGCAAGCATTTCCCGGCGGCATTT
CTGGGCCGCGTGACGGTGATCCCTTACCTGCCGCTGGATGAACCGTCGCGTGGCGTGATTGCCCGTCTGC
ACCTTGACCGGCTGGTGGCGCGGATGGGTGAACAGCACGGCGTGACGCTGACGTATAGCGAGGAACTGGT
CGCACATATTGTGGCGTGCTGTCCAATGCATGAAACGGGCGCGCGGTTGCTGATTGGCTACATCGAACAG
CACATTCTGCCACGACTGTCGCGCTACTGGTTGCAGGCCATGACGGAAAAAGCCGCTATCAGGCAGATTG
ATATCGGCGTTAATGGTGATGAGCAGATTGTTTTTGAGATCGTTTGCTGA
 Primer design