SecReT6
Protein ID: 431802761
SecReT6 ID715
T6SS typei4b
Gene symbol-
Locus tagB479_14135
StrainPseudomonas putida HB3267
Repliconchromosome [GenBank: NC_019905] [Browse all T6SS(s) in this replicon]
Location [Strand]3106539..3110342 [+]
ProductImcF domain-containing protein
NoteTssM
UniProt IDL0FLU9
KEGG IDppuh:B479_14135
PDB IDNA
Domain hit(s) vs Pfam ImcF-related_N [PF14331], Evalue: 4.50E-60, Aligned region: 181..435
IcmF-related [PF06761], Evalue: 2.70E-45, Aligned region: 491..555
IcmF-related [PF06761], Evalue: 2.70E-45, Aligned region: 635..878
DUF1215 [PF06744], Evalue: 4.00E-23, Aligned region: 317..343
DUF1215 [PF06744], Evalue: 4.00E-23, Aligned region: 780..821
DUF1215 [PF06744], Evalue: 4.00E-23, Aligned region: 1011..1126
AAA_16 [PF13191], Evalue: 0.00031, Aligned region: 112..258
AAA_16 [PF13191], Evalue: 0.00031, Aligned region: 474..474
AAA_16 [PF13191], Evalue: 0.00031, Aligned region: 863..906
Protein Sequence: 1267 a.a.     [Download]
>gi|431802761|ref|YP_007229664.1| ImcF domain-containing protein [Pseudomonas putida HB3267]
MKTLLRLLKNFWFLLLLLWLASLLTCWLVAPLLPWLQQHLPEALAIISACFLLVIVLRQYQRIRAEHNLE
NLLQIEVDRSWNATGEFRDQQVLRERLKHAIAMLRTDRSAGGGGKAALSDLPWYLVVGMSAAGKTSLLTH
SGLSASIATANDSESGTQHCDWYFSPDAVMIDTAGRYLRDDQSASEFSAFLRMLRKQRGKAAINGLVMVV
SLPELLAANSDERNALAAQLVARVEEYAECLDANPPVYLMLSKTDQLPGFSQAFDGLDLHERQQPLGMTF
GLSEIRNNGLHAVLQTRLGNLQNHIRQHVDAQVIALGAEADSTLLNFPQYFAALSGVLEQFLEHFTRGHR
GGAPLLLRGLYFTSALQTGQQLGQVYEDVIADEFALQAAYDEHTENVGKAAGNRSYFITDTFRQVIFPDR
DLTLYQSRLGRQAAFSPLLLGLAAATGLLFIGWQALSFTNNRQWLDSLRVQLAQIEQAEDREQQLAAGKG
LEVLREQMARVENHRLQGVPLQLGGGLYHGEAIHQVTRTAYLAQLRSQALEPIARSLQVQMRAFNTFANG
INQELEFTPAPTPKKRNGKPLAPAIAAKAQAALGNSRAGAYAAKVNLATASDAAELSATTGGLSLSEEML
GRLDEQQVASIIDAYNTLKLYLLLTEPQGHPDPAFVAANLPQAWASAATEGTPADAAVIAENAPLYVQLL
EQGQAPSLPRNEQLINETRQNLKSFMISSSLVDREYLRLQLESSRQFPALSLNDLVPQPGRALLYGSAGV
PAIYTRQGWDTFVKPELIKLVSGNLRNESDWVLDGEGGDAIVQKANFVREFMTRYKRDYTQAWYKMVSSV
GVRHFADLASATQQLGLLSDVQNSPVKNLLAAVNDNTQWDLPVKHAIPAPGSTREDGFWSKVSGLLDTKD
ALPANVAPALPAVDDGSLAKRFEPVARVFAENNAEGADSTIMDRYLAALRKLKVRMNNIQRSQDVGKSSK
QLISETLEGQPSEVTNVRNYVESSVDTSQDGLSRSLQGLFSLPIQYAWATLRDPAGQQIAKAWAQQIAKP
WEQVMAHRYPIAGSSRNEASVKDLQRFVDPDSGLLPAFKRNEIGNLAGGEGLGVGDGKAPALVNPGMLNS
IDKASSVGQVIASLSDRDNGFEIMLEPSANFTDIVFTLDGQEQHYRNGRSSWNRFAWPGTSNAPGARLDV
VTLSGARVTVFDFPGRWGLLRMNESARVEDLDGIQQRFSWNTASGRVSLVVRNFGGVKLTDLGDVKALSA
LNDRGAQ
 
Nucleotide Sequence: 3804 bp     [Download]
>gi|431799958|ref|NC_019905.1|:3106539-3110342 Pseudomonas putida HB3267, complete genome
ATGAAAACATTACTGCGCCTTTTGAAGAATTTCTGGTTTCTCCTGCTGCTGCTGTGGCTGGCGAGCCTGT
TGACCTGCTGGTTGGTCGCCCCGTTGCTGCCATGGCTGCAACAGCACCTGCCCGAAGCACTGGCAATCAT
CAGCGCCTGCTTCCTGCTGGTGATCGTGCTGCGCCAATACCAGCGCATTCGCGCCGAGCACAACCTGGAG
AACCTGCTGCAGATCGAGGTTGATCGCTCGTGGAATGCCACTGGCGAGTTCCGTGACCAGCAGGTGCTGC
GCGAACGCCTCAAGCATGCCATTGCCATGTTGCGCACCGACCGCTCCGCTGGAGGCGGTGGCAAGGCGGC
ACTGTCCGACTTGCCCTGGTACCTGGTGGTTGGCATGTCGGCAGCCGGCAAGACCTCGCTGCTGACCCAT
TCCGGCCTGTCGGCCAGCATTGCCACGGCCAACGACAGCGAAAGCGGCACCCAGCACTGCGACTGGTACT
TCAGCCCCGACGCGGTAATGATCGACACCGCCGGCCGCTATTTGCGTGATGACCAGTCGGCCAGCGAGTT
CTCGGCCTTCCTGCGCATGCTGCGCAAGCAGCGCGGCAAGGCGGCGATCAATGGCCTGGTAATGGTGGTC
AGCCTGCCCGAGCTGCTGGCAGCCAACAGCGACGAACGCAATGCCCTGGCGGCCCAGCTGGTGGCGCGGG
TGGAAGAATACGCCGAGTGCCTCGACGCCAACCCGCCGGTGTACCTGATGCTGAGCAAGACCGACCAGTT
GCCGGGCTTCAGCCAGGCGTTCGACGGCCTTGACCTGCATGAACGCCAGCAACCGCTGGGCATGACCTTC
GGCCTGTCGGAAATCCGCAACAACGGCCTGCACGCCGTGCTGCAGACGCGCCTGGGCAACCTGCAGAACC
ACATTCGCCAGCATGTCGACGCACAGGTGATCGCCCTCGGTGCCGAAGCCGACAGCACCCTGCTGAACTT
CCCGCAATACTTCGCCGCACTCAGCGGTGTCCTCGAGCAGTTCCTGGAGCACTTCACCCGCGGCCATCGC
GGCGGTGCCCCGCTGCTGCTGCGCGGCCTGTACTTCACCAGCGCCCTGCAGACCGGGCAGCAGCTGGGGC
AGGTATACGAAGACGTCATCGCCGACGAATTCGCCCTGCAAGCCGCCTACGATGAGCACACCGAGAACGT
CGGCAAGGCCGCGGGCAACCGCAGCTACTTCATCACCGACACCTTCCGCCAGGTGATCTTCCCCGATCGC
GACCTGACCCTGTACCAGTCGCGCCTGGGCCGCCAGGCTGCGTTCAGCCCGCTGCTGCTGGGCCTGGCCG
CCGCCACCGGGTTGCTGTTCATCGGTTGGCAGGCACTGTCGTTCACCAATAACCGCCAATGGCTGGACAG
CCTGCGCGTGCAGCTGGCGCAGATCGAGCAGGCAGAAGACCGCGAGCAGCAGCTGGCCGCTGGCAAGGGC
CTGGAAGTGCTGCGCGAACAGATGGCCCGCGTCGAAAACCATCGCCTGCAGGGTGTACCACTGCAGTTGG
GGGGTGGCCTGTACCATGGCGAAGCCATCCACCAGGTGACTCGCACCGCCTACCTGGCGCAACTGCGCAG
CCAGGCGCTGGAGCCGATCGCACGCAGCCTGCAAGTGCAGATGCGGGCCTTCAACACCTTCGCCAACGGT
ATCAACCAGGAGCTGGAATTCACCCCGGCCCCGACACCGAAAAAACGCAATGGCAAGCCGCTGGCCCCGG
CCATTGCAGCCAAGGCCCAGGCTGCGCTGGGCAACAGCCGCGCCGGTGCCTATGCCGCCAAGGTCAACCT
GGCCACCGCCAGCGATGCCGCCGAGCTGTCTGCCACCACCGGTGGCCTGTCACTGTCCGAAGAAATGCTC
GGGCGCCTCGACGAACAGCAGGTGGCCTCGATCATCGATGCCTACAACACCCTCAAGCTGTACCTGTTGC
TGACCGAGCCCCAAGGCCATCCGGACCCGGCCTTCGTCGCTGCCAACCTGCCCCAGGCCTGGGCCAGCGC
CGCCACCGAAGGCACTCCGGCCGACGCAGCCGTGATCGCAGAAAATGCCCCGCTTTACGTACAGTTGCTG
GAACAAGGCCAGGCGCCGTCGTTGCCGCGTAACGAACAGCTGATCAACGAAACCCGGCAAAACCTCAAGT
CGTTCATGATCTCCAGCTCGCTGGTCGATCGCGAGTACCTGCGCCTGCAACTCGAGTCGAGCCGCCAGTT
CCCGGCCCTGAGCCTTAACGACCTGGTGCCGCAACCGGGCCGCGCGTTGCTGTATGGCTCTGCTGGCGTA
CCGGCAATCTATACCCGCCAGGGCTGGGACACCTTCGTCAAGCCGGAACTGATCAAGCTGGTGTCGGGCA
ACCTGCGCAACGAGTCGGACTGGGTGCTGGACGGTGAAGGCGGCGATGCCATCGTGCAGAAGGCCAACTT
CGTGCGCGAGTTCATGACCCGCTACAAGCGCGACTACACCCAGGCCTGGTACAAGATGGTCAGCAGCGTG
GGGGTACGCCACTTCGCCGACCTGGCCTCGGCCACCCAGCAGCTGGGGCTGCTCAGCGATGTGCAGAACT
CGCCGGTAAAGAACCTGCTGGCGGCGGTCAATGACAACACCCAGTGGGACCTGCCGGTCAAGCACGCCAT
CCCGGCCCCCGGTAGTACCCGCGAAGACGGCTTCTGGAGCAAGGTCTCCGGCCTGCTCGACACCAAGGAC
GCCCTGCCCGCCAACGTCGCCCCGGCCCTGCCGGCGGTGGACGACGGCAGCCTGGCCAAGCGCTTCGAAC
CGGTGGCGCGGGTATTTGCCGAAAACAACGCCGAAGGCGCCGACAGCACCATCATGGACCGCTACCTGGC
CGCCTTGCGCAAGCTCAAGGTGCGCATGAACAACATCCAGCGTTCGCAGGATGTGGGCAAGAGCAGCAAG
CAGCTGATCAGCGAGACCCTAGAAGGCCAGCCGAGCGAAGTCACCAACGTGCGCAACTATGTGGAAAGCA
GCGTCGACACCAGCCAGGACGGCCTGTCGCGCTCGCTGCAGGGGCTGTTCAGCCTGCCTATCCAGTATGC
CTGGGCGACCCTGCGCGACCCGGCCGGCCAGCAGATCGCCAAGGCCTGGGCGCAGCAGATCGCCAAGCCT
TGGGAACAGGTCATGGCGCACCGCTACCCGATTGCCGGCAGCAGCCGCAACGAGGCGTCGGTAAAGGACC
TGCAGCGCTTCGTCGACCCCGACAGCGGCCTGCTGCCGGCCTTCAAGCGCAACGAAATCGGCAACCTGGC
CGGGGGTGAAGGCCTGGGTGTGGGCGACGGCAAGGCACCGGCGCTGGTCAACCCAGGCATGCTCAACAGC
ATCGACAAGGCCAGCTCCGTGGGCCAGGTGATCGCCAGCCTGTCGGACCGTGACAACGGCTTCGAAATCA
TGCTGGAACCTTCTGCCAACTTCACCGACATCGTGTTCACCCTCGATGGCCAGGAACAGCACTACCGCAA
CGGCCGCAGTAGCTGGAACCGCTTCGCCTGGCCGGGCACCAGCAACGCTCCGGGTGCCCGCCTGGATGTG
GTCACCCTCAGTGGCGCGCGGGTCACCGTGTTCGACTTCCCCGGGCGCTGGGGCCTGCTGCGCATGAACG
AAAGCGCCCGGGTCGAAGACCTGGACGGCATTCAGCAACGCTTCAGCTGGAACACCGCCAGCGGCCGCGT
GAGCCTTGTAGTGCGCAACTTCGGTGGGGTGAAACTGACCGACCTGGGTGATGTCAAGGCGCTGAGCGCC
CTCAACGACAGGGGCGCCCAATGA
 Primer design

Protein ID: 431802763
SecReT6 ID715
T6SS typei4b
Gene symbol-
Locus tagB479_14145
StrainPseudomonas putida HB3267
Repliconchromosome [GenBank: NC_019905] [Browse all T6SS(s) in this replicon]
Location [Strand]3111244..3113739 [+]
ProductOmpA/MotB domain-containing protein
NoteTssM
UniProt IDL0FL34
KEGG IDppuh:B479_14145
PDB IDNA
Domain hit(s) vs Pfam ImcF-related_N [PF14331], Evalue: 3.20E-67, Aligned region: 83..112
ImcF-related_N [PF14331], Evalue: 3.20E-67, Aligned region: 189..453
OmpA [PF00691], Evalue: 9.50E-16, Aligned region: 716..811
IcmF-related [PF06761], Evalue: 2.00E-08, Aligned region: 95..132
IcmF-related [PF06761], Evalue: 2.00E-08, Aligned region: 323..323
IcmF-related [PF06761], Evalue: 2.00E-08, Aligned region: 507..640
Protein Sequence: 831 a.a.     [Download]
>gi|431802763|ref|YP_007229666.1| OmpA/MotB domain-containing protein [Pseudomonas putida HB3267]
MNKIKYYCLRYQPYLLGVAFFLAIFLVWAIGCALGFASLHSLLAGIGVFLLLSAGYVLLLYRGAGQHHNL
EGLLRDDADQAVLNATPADREEVSLLRERLLQSIERLRSNTPRGTSAKDALYALPWYLVIGQPAAGKSTM
ILQSGLNFPYAEREGARVAGLGGTRNCDWFFSSEAVLLDTAGRYMNSPEEAGKWRGFLQLLRQHRQRRPL
NGLIVSVSIADILHGSAEDQDRVAKRLRERIQESCALLEVRLPIYLVFTKCDLIPGFTPFYRQLDDAARG
EVMGKTFSHKGYAQADWGQRFGKAMDELTGYWQQVASQHLVQQDIQVTRQNNAAYRFPLELAALKPRLQQ
FVDSLLRANPYQNAEMLRGFYFTAALQADEALWGSHGQHVAERFALEHAEGTATAVSQPAPLFINSLFRK
VIIPDQHLVALYTSNTRERRRKAGWVAATGLAALVLCSLWGWSYLNNRATLASIAGELAQAKADDQAARG
QYAAWHSLDRLRFWAEHYYQQHREQGVPLGMRLGLYQGHEVEPLLRSRYFATLQNVMLKPTADNLTRTLY
LLTTIKVYQRNTRELQPVSGVDSVEAEALPHDNRAQSIADFGKAALDTYVMLSPARRENADPAFLKAHLP
DYWYPAIARHTGKSMAAAASEAGGNQDYLYASRQITFYSDQIREPDVPRILDNAFLMSSSRNYIDSLRAQ
SLRSIETITLESDTLFAFGRADFQSLKSEGQRQLSAIASKLLNTPDIGKIIISGHADQLGDSQGNLQVSK
QRAQTIRTYLVGKGVPAELVVAQGEGSRKPLVNCDLQQPRAQLIKCLEPNRRVEIEVRGLN
 
Nucleotide Sequence: 2496 bp     [Download]
>gi|431799958|ref|NC_019905.1|:3111244-3113739 Pseudomonas putida HB3267, complete genome
ATGAACAAGATCAAGTACTACTGCCTGCGCTACCAACCCTACCTGCTGGGAGTGGCGTTCTTCCTGGCGA
TCTTCCTGGTCTGGGCCATCGGCTGCGCCCTGGGCTTCGCCTCGCTGCATAGCCTGCTGGCCGGTATCGG
CGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGCCGGCCAGCACCACAACCTC
GAAGGGTTGCTGCGCGACGATGCCGACCAGGCGGTACTCAACGCCACCCCCGCCGACCGCGAAGAAGTAA
GCCTGCTGCGCGAACGCCTGCTGCAGAGCATCGAGCGCCTGCGCAGCAACACACCTCGCGGCACCTCGGC
CAAGGACGCGCTGTACGCCCTGCCCTGGTACCTGGTGATCGGTCAGCCGGCCGCCGGCAAGAGCACGATG
ATCCTGCAGTCGGGCCTGAACTTCCCCTATGCCGAACGCGAAGGCGCACGGGTTGCGGGGCTTGGCGGCA
CGCGCAACTGCGACTGGTTCTTCAGCTCCGAAGCCGTGCTGCTGGATACCGCCGGGCGCTACATGAACAG
CCCCGAAGAAGCCGGCAAGTGGCGCGGCTTCCTGCAGCTGTTGCGCCAGCATCGCCAACGCCGCCCTCTC
AACGGCTTGATCGTCAGCGTCAGCATCGCCGACATCCTGCATGGCTCGGCCGAGGACCAGGACCGCGTGG
CCAAGCGCCTGCGTGAACGGATCCAGGAAAGCTGCGCGCTGCTGGAAGTGCGCCTGCCGATCTACCTGGT
GTTCACCAAGTGCGACCTGATCCCCGGCTTCACCCCGTTCTATCGCCAGCTTGACGACGCCGCGCGTGGC
GAGGTGATGGGCAAGACCTTCTCGCACAAGGGTTACGCGCAGGCCGACTGGGGCCAGCGCTTCGGCAAGG
CGATGGACGAACTGACCGGTTACTGGCAGCAGGTGGCGAGCCAGCACCTGGTGCAGCAGGACATTCAGGT
CACCCGGCAGAACAACGCTGCCTACCGCTTCCCGCTGGAGCTGGCCGCGCTCAAGCCGCGCCTGCAGCAG
TTCGTCGACAGCCTGTTGCGTGCCAACCCGTACCAGAATGCCGAAATGCTGCGCGGGTTCTATTTCACTG
CCGCACTGCAGGCCGACGAAGCCCTGTGGGGCAGCCACGGCCAGCATGTGGCCGAACGCTTCGCCCTCGA
ACATGCCGAAGGCACCGCCACTGCCGTCAGCCAGCCGGCGCCGCTGTTCATCAACAGCCTGTTCCGCAAG
GTGATCATCCCTGACCAGCACCTGGTGGCGCTGTACACCAGCAACACGCGGGAGCGCCGGCGCAAGGCGG
GCTGGGTTGCCGCCACCGGCCTGGCAGCCCTGGTGCTGTGCAGCCTGTGGGGCTGGTCGTACCTGAACAA
CCGCGCCACCCTGGCCAGCATCGCCGGCGAACTGGCCCAGGCCAAGGCCGACGACCAAGCTGCCCGCGGC
CAGTACGCCGCCTGGCATAGCCTTGACCGCTTGCGCTTCTGGGCCGAGCACTACTATCAGCAGCACCGCG
AACAGGGCGTGCCGCTGGGCATGCGCCTGGGCCTGTACCAGGGCCATGAGGTCGAGCCGCTGCTGCGCAG
CCGTTACTTCGCCACGCTGCAGAACGTGATGCTCAAGCCCACGGCAGACAACCTGACCCGCACCCTGTAC
CTGCTGACCACGATCAAGGTGTACCAGCGCAACACCCGCGAACTGCAGCCTGTGAGCGGCGTGGACAGCG
TCGAGGCCGAGGCGCTGCCACATGACAACCGCGCGCAGTCGATCGCCGACTTCGGCAAGGCAGCGCTGGA
TACCTACGTGATGCTCTCGCCGGCCCGACGCGAAAACGCCGACCCGGCGTTTCTCAAGGCGCACCTGCCC
GACTACTGGTACCCGGCCATCGCTCGCCATACCGGCAAGAGCATGGCCGCGGCCGCCAGCGAGGCCGGCG
GCAACCAGGACTACCTGTACGCCAGCCGCCAGATCACCTTCTACAGCGACCAGATTCGTGAGCCGGATGT
GCCGCGTATCCTCGACAACGCCTTCCTGATGTCCAGTTCGCGCAATTACATCGACAGCCTGCGCGCCCAG
TCGCTGCGTTCGATCGAGACCATCACGCTGGAGTCCGACACCCTGTTCGCTTTCGGCCGGGCCGACTTCC
AGAGCCTGAAGAGCGAGGGCCAGCGCCAGCTGAGCGCGATCGCCAGCAAACTGCTGAACACGCCCGACAT
CGGCAAGATCATCATTTCCGGCCACGCCGACCAGCTCGGCGACAGCCAAGGCAACCTGCAGGTTTCGAAA
CAGCGGGCGCAGACCATTCGCACCTACCTGGTCGGCAAGGGCGTACCTGCCGAACTGGTGGTCGCCCAGG
GCGAAGGCAGCCGCAAGCCGCTGGTCAACTGCGACCTGCAGCAACCGCGGGCGCAACTGATCAAGTGCCT
GGAGCCCAACCGCCGGGTGGAAATCGAAGTACGCGGGCTCAACTGA
 Primer design