SecReT6
Protein ID: 558672484
SecReT6 ID873
T6SS typei4a
Gene symbol-
Locus tagPA1S_gp0171
StrainPseudomonas aeruginosa PA1
Repliconchromosome [GenBank: NC_022808] [Browse all T6SS(s) in this replicon]
Location [Strand]203985..206534 [+]
ProductClpB protein
NoteTssH
UniProt IDU6A5V6
KEGG IDNA
PDB IDNA
Domain hit(s) vs Pfam AAA_2 [PF07724], Evalue: 1.30E-37, Aligned region: 220..296
AAA_2 [PF07724], Evalue: 1.30E-37, Aligned region: 611..775
AAA [PF00004], Evalue: 1.00E-20, Aligned region: 220..350
AAA [PF00004], Evalue: 1.00E-20, Aligned region: 464..519
AAA [PF00004], Evalue: 1.00E-20, Aligned region: 617..734
AAA_5 [PF07728], Evalue: 1.00E-14, Aligned region: 220..240
AAA_5 [PF07728], Evalue: 1.00E-14, Aligned region: 616..735
Clp_N [PF02861], Evalue: 6.90E-12, Aligned region: 21..71
Clp_N [PF02861], Evalue: 6.90E-12, Aligned region: 100..125
AAA_22 [PF13401], Evalue: 3.40E-09, Aligned region: 220..301
AAA_22 [PF13401], Evalue: 3.40E-09, Aligned region: 336..392
AAA_22 [PF13401], Evalue: 3.40E-09, Aligned region: 615..720
AAA_16 [PF13191], Evalue: 8.60E-09, Aligned region: 75..75
AAA_16 [PF13191], Evalue: 8.60E-09, Aligned region: 197..240
AAA_16 [PF13191], Evalue: 8.60E-09, Aligned region: 264..298
AAA_16 [PF13191], Evalue: 8.60E-09, Aligned region: 431..535
AAA_16 [PF13191], Evalue: 8.60E-09, Aligned region: 606..657
AAA_16 [PF13191], Evalue: 8.60E-09, Aligned region: 681..708
AAA_14 [PF13173], Evalue: 5.20E-06, Aligned region: 220..301
AAA_14 [PF13173], Evalue: 5.20E-06, Aligned region: 615..711
ClpB_D2-small [PF10431], Evalue: 5.50E-06, Aligned region: 781..848
AAA_19 [PF13245], Evalue: 5.70E-06, Aligned region: 217..242
AAA_19 [PF13245], Evalue: 5.70E-06, Aligned region: 613..638
Sigma54_activat [PF00158], Evalue: 2.00E-05, Aligned region: 243..262
Sigma54_activat [PF00158], Evalue: 2.00E-05, Aligned region: 615..733
Zeta_toxin [PF06414], Evalue: 2.40E-05, Aligned region: 220..240
Zeta_toxin [PF06414], Evalue: 2.40E-05, Aligned region: 610..656
AAA_17 [PF13207], Evalue: 2.50E-05, Aligned region: 220..261
AAA_17 [PF13207], Evalue: 2.50E-05, Aligned region: 513..516
AAA_17 [PF13207], Evalue: 2.50E-05, Aligned region: 620..653
IstB_IS21 [PF01695], Evalue: 0.00015, Aligned region: 214..239
IstB_IS21 [PF01695], Evalue: 0.00015, Aligned region: 616..636
AAA_18 [PF13238], Evalue: 0.00027, Aligned region: 220..240
AAA_18 [PF13238], Evalue: 0.00027, Aligned region: 620..651
FtsK_SpoIIIE [PF01580], Evalue: 0.00057, Aligned region: 201..261
FtsK_SpoIIIE [PF01580], Evalue: 0.00057, Aligned region: 439..531
NACHT [PF05729], Evalue: 0.00085, Aligned region: 220..248
NACHT [PF05729], Evalue: 0.00085, Aligned region: 617..641
T2SE [PF00437], Evalue: 0.0012, Aligned region: 209..236
T2SE [PF00437], Evalue: 0.0012, Aligned region: 591..685
AAA_28 [PF13521], Evalue: 0.0013, Aligned region: 220..266
AAA_28 [PF13521], Evalue: 0.0013, Aligned region: 617..636
ResIII [PF04851], Evalue: 0.0019, Aligned region: 207..241
ResIII [PF04851], Evalue: 0.0019, Aligned region: 288..301
ResIII [PF04851], Evalue: 0.0019, Aligned region: 602..638
AAA_25 [PF13481], Evalue: 0.004, Aligned region: 220..244
AAA_25 [PF13481], Evalue: 0.004, Aligned region: 274..315
AAA_25 [PF13481], Evalue: 0.004, Aligned region: 463..508
AAA_25 [PF13481], Evalue: 0.004, Aligned region: 613..641
AAA_25 [PF13481], Evalue: 0.004, Aligned region: 787..804
RNA_helicase [PF00910], Evalue: 0.0055, Aligned region: 221..241
RNA_helicase [PF00910], Evalue: 0.0055, Aligned region: 618..638
AAA_29 [PF13555], Evalue: 0.0097, Aligned region: 210..236
AAA_29 [PF13555], Evalue: 0.0097, Aligned region: 614..641
Protein Sequence: 849 a.a.     [Download]
>gi|558672484|ref|YP_008809192.1| ClpB protein [Pseudomonas aeruginosa PA1]
MELAALIGRLNPDCRRALERAAQRCLQRTHHYVEIEHLLLELLDIDGGDFACLLPRFGLERDALVAEINL
SLELFKAGNTRTPALSAHTIGLLEDAVVHASVLGQAQIRSGLLLLALLDREERRALLLNSASSLLRIPHE
ALQANLLEWIQASREQPPAPNRPAAGGDKPESAQDPLLDQYTQDLTAEARAGRIDPIVGRDGEIRQCVDI
LLRRRQNNPILVGAPGVGKTAVVEGLALRIAAGEVPPSLQEVILRVLDLGLLQAGASMKGEFEQRLKGVI
DAVRNSAQPIILFIDEAHTLIGAGGAEGGSDAANLLKPTLARGELRTLAATTWLEYKKYFEKDPALTRRF
QLVQVEEPDEATAVEMLRGVAGKLELHHGVQIMDAAIVDAVKLSHRYISGRQLPDKAISVLDTACARVAL
GQHYVPPPLESLRHREQALEEELQRLRREQATGLDHSARITALESESGDNRRTIRELETRWDEEREAVRE
LLDTRRELLALSESADAAKPDEELDGRIDHLAAELARLAAGLEAIRQDDPLVPEQVDSRTVAAVIAGWTG
IPVGKMLADEAHAIRSLAQRMGQRVMGQEAALGAIAQRIQAYRAGLSDPAKPVGVFLLPGPTGVGKTETA
YALADALYGGERNLISINLSEYQEAHTVSQLKGAPPGYVGYGSGGVLTEAVRRKPYSVVLLDEIEKAHPD
VLEAFYNVFDKGVMEDGTGLVVDFRNTVILATSNVGAELLLDSPAEQVATLAFDERLRKVLLQTFRPAFL
ARMTVVPYRPLEEATLEGIVVAKLEKLRERYKAATGKQFDFDPAIVKAVLAKCSAAGARDIENVLMAQVT
GKLAEWVLE
 
Nucleotide Sequence: 2550 bp     [Download]
>gi|558672313|ref|NC_022808.1|:203985-206534 Pseudomonas aeruginosa PA1, complete genome
ATGGAACTCGCCGCCCTGATCGGCCGCCTCAACCCTGACTGTCGCCGCGCCCTGGAGCGCGCCGCGCAAC
GCTGCCTGCAACGCACCCATCATTACGTAGAGATCGAGCACCTGCTGCTGGAGCTGCTGGACATCGACGG
CGGCGACTTCGCCTGCCTGCTGCCGCGCTTCGGCCTGGAGCGCGACGCCCTGGTCGCCGAGATCAACCTG
TCGCTGGAGCTGTTCAAGGCCGGCAATACCCGCACTCCGGCGCTGTCCGCGCACACCATCGGCCTGCTCG
AAGACGCCGTGGTCCACGCCAGCGTGCTCGGCCAGGCGCAGATCCGTTCCGGCCTGCTGCTGCTCGCCCT
GCTCGACCGCGAGGAGCGCCGCGCCCTGTTGCTGAACAGCGCGTCGTCGCTGCTGCGGATTCCCCACGAG
GCCTTGCAGGCCAACCTGCTGGAGTGGATCCAGGCCTCCCGCGAACAGCCGCCCGCGCCGAACCGCCCGG
CGGCAGGCGGCGACAAGCCGGAAAGCGCCCAGGACCCGCTGCTCGACCAGTACACCCAGGACCTCACCGC
CGAAGCCCGCGCCGGGCGCATCGACCCCATAGTCGGGCGCGACGGGGAGATCCGCCAGTGCGTCGACATC
CTCCTGCGCCGGCGGCAGAACAACCCGATCCTGGTCGGCGCGCCGGGCGTCGGCAAGACCGCGGTGGTCG
AGGGCCTGGCCCTGCGCATCGCCGCCGGCGAGGTGCCGCCGTCGTTGCAGGAGGTGATCCTGCGGGTGCT
CGACCTCGGCCTGTTGCAGGCCGGCGCCAGCATGAAGGGCGAGTTCGAGCAGCGCCTCAAGGGCGTGATC
GACGCCGTGCGCAACAGCGCGCAGCCGATCATCCTGTTCATCGACGAGGCGCACACGCTGATCGGCGCCG
GCGGCGCGGAAGGCGGCAGCGACGCCGCCAACCTGCTCAAGCCGACCCTGGCGCGCGGCGAGTTGCGCAC
CCTGGCGGCCACCACCTGGCTGGAATACAAGAAATACTTCGAGAAGGACCCGGCGCTGACCCGGCGCTTC
CAGCTGGTCCAGGTCGAGGAGCCGGACGAGGCCACCGCCGTGGAGATGCTGCGCGGCGTCGCCGGCAAGC
TGGAACTGCATCACGGCGTGCAGATCATGGACGCGGCCATCGTCGATGCGGTGAAGCTGTCGCATCGCTA
CATCTCCGGCCGCCAGTTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCCTGCGCGCGGGTCGCCCTC
GGCCAGCACTACGTGCCGCCGCCGCTGGAAAGCCTGCGCCATCGCGAGCAGGCGCTGGAAGAGGAATTGC
AGCGGCTGCGCCGGGAACAGGCCACCGGCCTCGACCACAGCGCGCGTATCACCGCCCTGGAAAGCGAGTC
GGGCGATAACCGCCGGACCATCCGCGAGCTGGAGACCCGCTGGGACGAGGAACGCGAAGCGGTGCGCGAA
CTGCTCGACACCCGCCGCGAACTGCTGGCCCTCAGCGAAAGCGCCGACGCGGCCAAGCCCGACGAGGAAC
TGGACGGTCGCATCGACCACCTGGCCGCCGAACTGGCGCGCCTGGCGGCCGGCCTCGAAGCCATCCGCCA
GGACGACCCGCTGGTTCCCGAGCAGGTGGACTCGCGTACCGTGGCCGCGGTGATCGCCGGCTGGACCGGC
ATCCCGGTGGGCAAGATGCTCGCCGACGAAGCCCACGCCATCCGTTCCCTGGCGCAACGAATGGGCCAGC
GGGTGATGGGCCAGGAGGCCGCCCTAGGCGCCATCGCCCAGCGCATCCAGGCCTATCGCGCCGGACTCAG
CGACCCGGCCAAGCCGGTCGGCGTATTCCTCCTGCCCGGCCCCACCGGCGTGGGCAAGACCGAGACCGCC
TACGCCCTGGCCGACGCCCTCTACGGCGGCGAACGCAACCTGATCAGCATCAACCTCTCCGAGTACCAGG
AGGCCCACACCGTCAGCCAGCTCAAGGGCGCCCCGCCCGGCTACGTCGGCTACGGCAGCGGCGGCGTGCT
CACCGAAGCGGTGCGCCGCAAGCCCTATTCGGTGGTGCTGCTGGACGAGATCGAGAAAGCCCATCCGGAC
GTGCTGGAAGCCTTCTACAACGTGTTCGACAAGGGCGTGATGGAAGACGGCACCGGCCTGGTGGTGGACT
TCAGGAACACCGTGATCCTCGCCACCAGCAACGTCGGCGCCGAACTGCTGCTGGACAGCCCGGCCGAACA
GGTCGCCACCCTGGCCTTCGACGAGCGCCTGCGCAAAGTCCTGCTGCAAACCTTCCGCCCGGCGTTCCTC
GCGCGCATGACCGTGGTGCCTTACCGGCCGCTGGAGGAAGCCACCCTGGAAGGCATCGTCGTGGCCAAGC
TGGAAAAACTGCGGGAACGCTACAAGGCCGCTACCGGCAAACAGTTCGACTTCGACCCAGCCATCGTCAA
GGCCGTGCTCGCCAAGTGCAGCGCGGCGGGCGCGCGGGATATCGAGAACGTGCTGATGGCGCAGGTGACG
GGGAAGTTGGCGGAGTGGGTACTCGAATGA
 Primer design