SecReT6
I. Summary
SecReT6 ID104 insolico
StrainBurkholderia sp. 383
Repliconchromosome 1 [Browse all T6SS(s) in this replicon]
AccessionNC_007510
Location407294..453532
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcep18194_A3541403632..404390 [+], 75978065018cytochrome c1 
2Bcep18194_A3542404483..405094 [+], 61278065019glutathione S-transferase 
3Bcep18194_A3543405166..405693 [+], 52878065020ClpXP protease specificity-enhancing factor 
4Bcep18194_A3544407294..407740 [-], 44778065021hypothetical protein 
5Bcep18194_A3545407888..408526 [+], 63978065022hypothetical protein 
6Bcep18194_A3546408597..409253 [-], 65778065023LytR/AlgR family transcriptional regulator 
7Bcep18194_A3547409580..409783 [+], 20478065024hypothetical protein 
8Bcep18194_A3548409843..410643 [-], 80178065025amino acid ABC transporter substrate-binding protein 
9Bcep18194_A3549410920..414144 [+], 322578065026Rhs element Vgr protein  TssI
10Bcep18194_A3550414182..418864 [+], 468378065027Rhs family protein 
11Bcep18194_A3551418875..419201 [+], 32778065028hypothetical protein 
12Bcep18194_A3553419980..420360 [+], 38178065029hypothetical protein 
13Bcep18194_A3554420524..420841 [+], 31878065030hypothetical protein 
14Bcep18194_A3555420931..421713 [-], 78378065031hypothetical protein  TssL
15Bcep18194_A3556421710..423056 [-], 134778065032hypothetical protein  TssK
16Bcep18194_A3557423160..423771 [-], 61278065033hypothetical protein  TssJ
17Bcep18194_A3558424146..424784 [+], 63978065034hypothetical protein 
18Bcep18194_A3559424831..425346 [+], 51678065035hypothetical protein  TssB
19Bcep18194_A3560425362..426852 [+], 149178065036hypothetical protein  TssC
20Bcep18194_A3561426923..427426 [+], 50478065037hypothetical protein  TssD
21Bcep18194_A3562427490..427975 [+], 48678065038hypothetical protein  TssE
22Bcep18194_A3563428053..429888 [+], 183678065039hypothetical protein  TssF
23Bcep18194_A3564429852..430952 [+], 110178065040hypothetical protein  TssG
24Bcep18194_A3565430996..433665 [+], 267078065041chaperonin clpA/B/, ATPase  TssH
25Bcep18194_A3566433708..434829 [+], 112278065042ImpA domain-containing protein  TssA
26Bcep18194_A3567434898..437576 [+], 267978065043Rhs element Vgr protein  TssI
27Bcep18194_A3568437578..439014 [+], 143778065044hypothetical protein 
28Bcep18194_A3569439016..439762 [+], 74778065045hypothetical protein 
29Bcep18194_A3570439808..440638 [+], 83178065046hypothetical protein 
30Bcep18194_A3571440736..441443 [+], 70878065047hypothetical protein 
31Bcep18194_A3572441518..441784 [+], 26778065048hypothetical protein 
32Bcep18194_A3573441925..442887 [-], 96378065049OmpA/MotB family outer membrane protein  TagL
33Bcep18194_A3574442892..443881 [-], 99078065050hypothetical protein 
34Bcep18194_A3575443878..447825 [-], 394878065051hypothetical protein  TssM
35Bcep18194_A3576448127..448738 [-], 61278065052hypothetical protein 
36Bcep18194_A3577449094..450047 [+], 95478065053hypothetical protein 
37Bcep18194_A3578450161..451279 [+], 111978065054Mg2+ transporter protein, CorA-like 
38Bcep18194_A3579451296..451448 [-], 15378065055hypothetical protein 
39Bcep18194_A3580451473..452450 [-], 97878065056zinc-containing alcohol dehydrogenase superfamily protein 
40Bcep18194_A3581452612..453532 [+], 92178065057LysR family transcriptional regulator 
41Bcep18194_A3582453656..455824 [-], 216978065058peptidase M1, membrane alanine aminopeptidase 
42Bcep18194_A3583456410..456961 [+], 55278065059hypothetical protein 
43Bcep18194_A3584457101..458234 [+], 113478065060methyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_I2693 , BTH_I2697, BTH_I2705, BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bcep18194_C76091247197..1250040 [-], 284478060722Rhs element Vgr protein BTH_I2693
2Bcep18194_C76121251227..1254571 [-], 334578060725Rhs element Vgr protein BTH_I2697
3Bcep18194_C76151256647..1259601 [-], 295578060728Rhs element Vgr protein BTH_I2705
4Bcep18194_A3561426923..427426 [+], 50478065037hypothetical protein BCAL0343

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation