SecReT6
I. Summary
SecReT6 ID105 insolico
StrainBurkholderia sp. 383
Repliconchromosome 2 [Browse all T6SS(s) in this replicon]
AccessionNC_007511
Location1082518..1121246
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcep18194_B09651077810..1079012 [+], 120378061815D-isomer specific 2-hydroxyacid dehydrogenase 
2Bcep18194_B09661079053..1080192 [-], 114078061816patatin 
3Bcep18194_B09671080404..1080865 [-], 46278061817hypothetical protein 
4Bcep18194_B09681080960..1081292 [-], 33378061818plastocyanin 
5Bcep18194_B09691081318..1082262 [-], 94578061819metallophosphoesterase 
6Bcep18194_B09701082518..1084107 [+], 159078061820phosphate transporter 
7Bcep18194_B09711084189..1085940 [+], 175278061821ABC anion transporter, fused inner membrane subunits 
8Bcep18194_B09721085952..1087298 [+], 134778061822nitrate/sulfonate/bicarbonate ABC transporter ATPase 
9Bcep18194_B09731087349..1088467 [-], 111978061823ImpA-like protein  TssA
10Bcep18194_B09741088464..1089519 [-], 105678061824hypothetical protein  TssG
11Bcep18194_B09751089519..1091408 [-], 189078061825hypothetical protein  TssF
12Bcep18194_B09761091446..1092018 [-], 57378061826hypothetical protein  TssE
13Bcep18194_B09771092011..1092865 [-], 85578061827virulence protein, SciE type  TagJ
14Bcep18194_B09781092862..1093512 [-], 65178061828hypothetical protein 
15Bcep18194_B09791094050..1096731 [+], 268278061829ATPase AAA  TssH
16Bcep18194_B09801096768..1097307 [+], 54078061830hypothetical protein  TssB
17Bcep18194_B09811097335..1098828 [+], 149478061831hypothetical protein  TssC
18Bcep18194_B09821098922..1099407 [+], 48678061832hypothetical protein  TssD
19Bcep18194_B09831099487..1099990 [+], 50478061833hypothetical protein  TssJ
20Bcep18194_B09841100022..1101368 [+], 134778061834hypothetical protein  TssK
21Bcep18194_B09851101550..1104081 [+], 253278061835Rhs element Vgr protein  TssI
22Bcep18194_B09861104053..1104976 [+], 92478061836hypothetical protein 
23Bcep18194_B09871104973..1105494 [+], 52278061837hypothetical protein 
24Bcep18194_B09881105593..1106120 [+], 52878061838hypothetical protein 
25Bcep18194_B09891106133..1108508 [+], 237678061839hypothetical protein 
26Bcep18194_B09901108534..1108815 [+], 28278061840hypothetical protein  PAAR
27Bcep18194_B09911108818..1110122 [+], 130578061841hypothetical protein  TssL
28Bcep18194_B09921110148..1114257 [+], 411078061842hypothetical protein  TssM
29Bcep18194_B09931114275..1115489 [+], 121578061843OmpA/MotB family outer membrane protein  TssL
30Bcep18194_B09941115779..1116720 [+], 94278061844hypothetical protein 
31Bcep18194_B09951116699..1117577 [-], 87978061845RpiR family transcriptional regulator 
32Bcep18194_B09961117941..1119692 [+], 175278061846gamma-glutamyltransferase 1 
33Bcep18194_B09971119870..1121246 [+], 137778061847Sodium/dicarboxylate symporter 
34Bcep18194_B09981121276..1121674 [-], 39978061848hypothetical protein 
35Bcep18194_B09991121719..1123011 [-], 129378061849FAD-dependent pyridine nucleotide-disulfide oxidoreductase 
36Bcep18194_B10001123200..1123814 [+], 61578061850TetR family transcriptional regulator 
37Bcep18194_B10011123839..1124750 [-], 91278061851LysR family transcriptional regulator 
38Bcep18194_B10021124859..1125620 [+], 76278061852Short-chain dehydrogenase/reductase SDR 
39Bcep18194_B10031125676..1126155 [-], 48078061853MerR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
SciK

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bcep18194_B09821098922..1099407 [+], 48678061832hypothetical protein SciK

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation