SecReT6
I. Summary
SecReT6 ID117 insolico
StrainXanthomonas oryzae pv. oryzae MAFF 311018
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_007705
Location3728990..3790911
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111511111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XOO_32793725079..3726098 [-], 102084624936hypothetical protein 
2XOO_32803726103..3728046 [-], 194484624937hypothetical protein 
3XOO_32813727958..3728980 [-], 102384624938hypothetical protein 
4XOO_32823728990..3730960 [-], 197184624939hypothetical protein 
5XOO_32833730945..3731970 [-], 102684624940hypothetical protein 
6XOO_32843731974..3734841 [-], 286884624941hypothetical protein 
7XOO_32853734860..3735765 [-], 90684624942hypothetical protein 
8XOO_32863735707..3738469 [-], 276384624943VGR-like protein  TssI
9XOO_32873738563..3738916 [-], 35484624944hypothetical protein 
10XOO_32883738947..3741676 [-], 273084624945ClpA/B-type chaperone protein  TssH
11XOO_32893741762..3742853 [-], 109284624946hypothetical protein  TssG
12XOO_32903742817..3744652 [-], 183684624947hypothetical protein  TssF
13XOO_32913744655..3745143 [-], 48984624948hypothetical protein  TssE
14XOO_32923745291..3745788 [-], 49884624949hypothetical protein  TssD
15XOO_32933745930..3747426 [-], 149784624950hypothetical protein  TssC
16XOO_32943747430..3747930 [-], 50184624951hypothetical protein  TssB
17XOO_32953747977..3748591 [-], 61584624952lipoprotein 
18XOO_32963748853..3749461 [+], 60984624953transmembrane protein  TssJ
19XOO_32973749613..3750947 [+], 133584624954hypothetical protein  TssK
20XOO_32983750947..3751735 [+], 78984624955transmembrane protein  TssL
21XOO_32993751746..3754463 [+], 271884624956VGR-like protein  TssI
22XOO_33003755996..3757966 [+], 197184624957VGR-like protein  TssI
23XOO_33013758372..3760603 [-], 223284624958hypothetical protein 
24XOO_33023760603..3761199 [-], 59784624959hypothetical protein 
25XOO_33033761192..3761785 [-], 59484624960hypothetical protein 
26XOO_33043762012..3764681 [-], 267084624961VGR-like protein  TssI
27XOO_33053764867..3765829 [+], 96384624962hypothetical protein 
28XOO_33063766597..3768948 [-], 235284624963hypothetical protein 
29XOO_33073768935..3769480 [-], 54684624964hypothetical protein 
30XOO_33083769562..3770884 [-], 132384624965hypothetical protein 
31XOO_33093771391..3771870 [-], 48084624966hypothetical protein 
32XOO_33103771894..3772358 [-], 46584624967hypothetical protein 
33XOO_33113772675..3773154 [-], 48084624968hypothetical protein 
34XOO_33123773178..3773642 [-], 46584624969hypothetical protein 
35XOO_33133773639..3774535 [-], 89784624970hypothetical protein 
36XOO_33143774535..3777351 [-], 281784624971VGR-like protein  TssI
37XOO_33153777472..3777690 [-], 21984624972hypothetical protein 
38XOO_33163778301..3779374 [+], 107484624973hypothetical protein  TssA
39XOO_33173779427..3780227 [-], 80184624974lipoprotein  TagL
40XOO_33183780230..3781213 [-], 98484624975hypothetical protein 
41XOO_33193781210..3784902 [-], 369384624976transmembrane protein  TssM
42XOO_33203784963..3786450 [-], 148884624977transmembrane protein 
43XOO_33213786504..3786764 [-], 26184624978hypothetical protein  PAAR
44XOO_33223786874..3787752 [-], 87984624979transmembrane protein 
45XOO_33233787952..3788692 [+], 74184624980hypothetical protein 
46XOO_33243788973..3789509 [+], 53784624981ISXoo3 transposase orfB 
47XOO_3325 (purT)3789709..3790911 [-], 120384624982phosphoribosylglycinamide formyltransferase 2 
48XOO_33263791102..3791518 [+], 41784624983hypothetical protein 
49XOO_33273791528..3791812 [+], 28584624984hypothetical protein 
50XOO_33283791809..3791988 [+], 18084624985hypothetical protein 
51XOO_33293792290..3792916 [+], 62784624986hypothetical protein 
52XOO_33303792980..3793654 [-], 67584624987DNA-3-methyladenine glycosylase 
53XOO_33313793657..3794061 [-], 40584624988hypothetical protein 
54XOO_33323794125..3795306 [-], 118284624989hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation