SecReT6
I. Summary
SecReT6 ID123 insolico
StrainChromohalobacter salexigens DSM 3043
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_007963
Location2526600..2567218
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Csal_22492524439..2525323 [-], 88592114371hypothetical protein 
2Csal_22512526600..2527553 [-], 95492114372hypothetical protein 
3Csal_22522527564..2530191 [-], 262892114373hypothetical protein 
4Csal_22532530188..2531084 [-], 89792114374hypothetical protein 
5Csal_22542531081..2533708 [-], 262892114375Rhs element Vgr protein  TssI
6Csal_22552533831..2534100 [+], 27092114376hypothetical protein  PAAR
7Csal_22562534091..2535245 [-], 115592114377hypothetical protein 
8Csal_22572535248..2536363 [-], 111692114378ImpA-like protein  TssA
9Csal_22582536669..2537199 [-], 53192114379hypothetical protein  TssD
10Csal_22592537272..2537520 [+], 24992114380hypothetical protein 
11Csal_22602537550..2540042 [-], 249392114381OmpA/MotB protein  TssM
12Csal_22612540070..2540987 [-], 91892114382hypothetical protein 
13Csal_22622541021..2545028 [-], 400892114383ImcF-like protein  TssM
14Csal_22632545043..2545756 [-], 71492114384hypothetical protein  TssL
15Csal_22642545753..2547099 [-], 134792114385hypothetical protein  TssK
16Csal_22652547192..2547737 [-], 54692114386putative lipoprotein  TssJ
17Csal_22662547783..2548430 [+], 64892114387hypothetical protein 
18Csal_22672548679..2549434 [+], 75692114388hypothetical protein 
19Csal_22682549491..2550024 [+], 53492114389hypothetical protein  TssB
20Csal_22692550036..2551535 [+], 150092114390hypothetical protein  TssC
21Csal_22702551658..2552140 [+], 48392114391hypothetical protein  TssE
22Csal_22712552140..2553975 [+], 183692114392hypothetical protein  TssF
23Csal_22722554023..2555015 [+], 99392114393hypothetical protein  TssG
24Csal_22732555012..2557681 [+], 267092114394ATPase AAA-2  TssH
25Csal_22742557718..2560333 [+], 261692114395Rhs element Vgr protein  TssI
26Csal_22752560337..2561224 [+], 88892114396hypothetical protein 
27Csal_22762561246..2563888 [+], 264392114397hypothetical protein 
28Csal_22772563890..2564963 [+], 107492114398hypothetical protein 
29Csal_22782565323..2567218 [+], 189692114399hypothetical protein 
30Csal_22792567220..2568296 [+], 107792114400hypothetical protein 
31Csal_22802568521..2570167 [-], 164792114401serine/threonine protein kinase 
32Csal_22812570427..2570957 [+], 53192114402inorganic diphosphatase 
33Csal_22822571077..2572162 [-], 108692114403hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation