SecReT6
I. Summary
SecReT6 ID126 insolico
StrainBurkholderia cenocepacia AU 1054
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_008060
Location2874630..2925644
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcen_26102870714..2871046 [-], 333107024154hypothetical protein 
2Bcen_26112871202..2871696 [-], 495107024155hypothetical protein 
3Bcen_26122871978..2872235 [+], 258107024156hypothetical protein 
4Bcen_26132872340..2874508 [+], 2169107024157peptidase M1, membrane alanine aminopeptidase 
5Bcen_26142874630..2875550 [-], 921107024158LysR family transcriptional regulator 
6Bcen_26152875702..2876691 [+], 990107024159zinc-binding alcohol dehydrogenase 
7Bcen_26162876719..2876868 [+], 150107024160hypothetical protein 
8Bcen_26172876912..2877940 [-], 1029107024161Mg2+ transporter protein, CorA-like 
9Bcen_26182878153..2879157 [-], 1005107024162hypothetical protein 
10Bcen_26192879279..2880124 [+], 846107024163peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 
11Bcen_26202880426..2884370 [+], 3945107024164ImcF-related  TssM
12Bcen_26212884367..2885356 [+], 990107024165hypothetical protein 
13Bcen_26222885566..2886309 [+], 744107024166OmpA/MotB protein  TagL
14Bcen_26232886577..2887197 [-], 621107024167hypothetical protein 
15Bcen_26242887230..2888099 [-], 870107024168hypothetical protein 
16Bcen_26252888276..2888533 [+], 258107024169OmpA/MotB protein  TagL
17Bcen_26262888616..2890877 [-], 2262107024170hypothetical protein 
18Bcen_26272890864..2891799 [-], 936107024171hypothetical protein 
19Bcen_26282892019..2892831 [-], 813107024172hypothetical protein 
20Bcen_26292892842..2893882 [-], 1041107024173hypothetical protein 
21Bcen_26302893904..2896447 [-], 2544107024174Rhs element Vgr protein  TssI
22Bcen_26312896514..2897635 [-], 1122107024175ImpA domain-containing protein  TssA
23Bcen_26322897679..2899724 [-], 2046107024176ATPase AAA  TssH
24Bcen_26332899906..2900394 [+], 489107024177hypothetical protein 
25Bcen_26342900388..2901404 [-], 1017107024178hypothetical protein  TssG
26Bcen_26352901452..2903287 [-], 1836107024179hypothetical protein  TssF
27Bcen_26362903364..2903849 [-], 486107024180hypothetical protein  TssE
28Bcen_26372903912..2904415 [-], 504107024181hypothetical protein  TssD
29Bcen_26382904486..2905976 [-], 1491107024182hypothetical protein  TssC
30Bcen_26392905992..2906507 [-], 516107024183hypothetical protein  TssB
31Bcen_26402906554..2907189 [-], 636107024184hypothetical protein 
32Bcen_26412907562..2908173 [+], 612107024185hypothetical protein  TssJ
33Bcen_26422908276..2909622 [+], 1347107024186hypothetical protein  TssK
34Bcen_26432909619..2910401 [+], 783107024187hypothetical protein  TssL
35Bcen_26442910488..2910805 [-], 318107024188hypothetical protein 
36Bcen_26452911341..2911916 [-], 576107024189hypothetical protein 
37Bcen_26462911927..2913678 [-], 1752107024190RHS protein 
38Bcen_26472913671..2916475 [-], 2805107024191hypothetical protein 
39Bcen_26482916636..2919827 [-], 3192107024192Rhs element Vgr protein  TssI
40Bcen_26492920184..2920984 [+], 801107024193extracellular solute-binding protein 
41Bcen_26502921094..2921297 [-], 204107024194hypothetical protein 
42Bcen_26512922322..2922966 [-], 645107024195hypothetical protein 
43Bcen_26522923030..2923914 [-], 885107024196hypothetical protein 
44Bcen_26532924028..2925644 [-], 1617107024197phage protein 
45Bcen_26542927028..2928290 [+], 1263107024198transposase IS116/IS110/IS902 
46Bcen_26552928837..2929562 [-], 726107024199hypothetical protein 
47Bcen_26562929802..2930530 [+], 729107024200hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bcen_26372903912..2904415 [-], 504107024181hypothetical protein BCAL0343

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation