SecReT6
I. Summary
SecReT6 ID132 insolico
StrainYersinia pestis Nepal516
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008149
Location2788522..2832309
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPN_24812783817..2784485 [+], 669108812642ABC transporter ATP-binding protein 
2YPN_24822784495..2785805 [+], 1311108812643heme-binding protein 
3YPN_24832786340..2787614 [+], 1275108812644molybdopterin biosynthesis protein MoeA 
4YPN_24842787616..2788386 [+], 771108812645molybdopterin biosynthesis protein MoeB 
5YPN_24852788522..2789730 [+], 1209108812646transposase for the IS285 insertion element 
6YPN_24862789774..2790427 [-], 654108812647hypothetical protein 
7YPN_24872790655..2792418 [-], 1764108812648ABC transporter ATP-binding protein 
8YPN_24882792933..2793556 [+], 624108812649hypothetical protein 
9YPN_24892793768..2795135 [-], 1368108812650hypothetical protein  TssA
10YPN_24902795160..2795612 [-], 453108812651hypothetical protein  TssE
11YPN_24912795612..2796292 [-], 681108812652hypothetical protein  TssJ
12YPN_24922796168..2797253 [-], 1086108812653hypothetical protein  TssG
13YPN_24932797217..2798980 [-], 1764108812654hypothetical protein  TssF
14YPN_24942799201..2799656 [-], 456108812655hypothetical protein 
15YPN_24952799671..2800729 [-], 1059108812656hypothetical protein  PAAR
16YPN_24962800747..2802348 [-], 1602108812657hypothetical protein  TssA
17YPN_24972802392..2805814 [-], 3423108812658hypothetical protein  TssM
18YPN_24982805811..2807043 [-], 1233108812659hypothetical protein 
19YPN_24992807873..2808046 [+], 174108812660IS630 orf 
20YPN_25002808155..2808475 [+], 321108812661transposase 
21YPN_25012808606..2808743 [+], 138108812662transposase 
22YPN_25022809208..2809678 [-], 471108812663hypothetical protein 
23YPN_25032809851..2812034 [-], 2184108812664hypothetical protein 
24YPN_25042812050..2812310 [-], 261108812665hypothetical protein 
25YPN_25052812464..2813237 [-], 774108812666hypothetical protein 
26YPN_25062813234..2815465 [-], 2232108812667hypothetical protein 
27YPN_25072815550..2817898 [-], 2349108812668hypothetical protein  TssI
28YPN_25082817901..2820543 [-], 2643108812669ATPase subunit of ATP-dependent protease  TssH
29YPN_25092820931..2821422 [-], 492108812670hypothetical protein  TssD
30YPN_25102821426..2823162 [-], 1737108812671OmpA-family membrane protein  TagL
31YPN_25112823162..2823848 [-], 687108812672membrane protein  TssL
32YPN_25122823845..2825197 [-], 1353108812673hypothetical protein  TssK
33YPN_25132825209..2826747 [-], 1539108812674hypothetical protein  TssC
34YPN_25142826796..2827296 [-], 501108812675hypothetical protein  TssB
35YPN_25152828285..2829133 [-], 849108812676acyl transferase 
36YPN_25162829232..2829480 [-], 249108812677acyl carrier protein 
37YPN_25172829518..2830006 [-], 489108812678hypothetical protein 
38YPN_25182830045..2830833 [-], 789108812679short-chain dehydrogenase 
39YPN_25192830836..2831612 [-], 777108812680polyketide biosynthesis enoyl-CoA hydratase 
40YPN_25202831590..2832309 [-], 720108812681enoyl-CoA hydratase 
41YPN_25212832302..2833540 [-], 1239108812682putative hydroxymethylglutaryl-coenzyme A synthase 
42YPN_25222833556..2834302 [-], 747108812683beta-ketoacyl-(acyl-carrier-protein) reductase 
43YPN_25232834295..2835578 [-], 1284108812684beta-ketoacyl-(acyl-carrier-protein) synthase 
44YPN_25242835568..2836092 [-], 525108812685(3R)-hydroxymyristoyl-ACP dehydratase 
45YPN_25252836356..2836676 [-], 321108812686hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPN_25092820931..2821422 [-], 492108812670hypothetical protein EC042_4529

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation