SecReT6
I. Summary
SecReT6 ID137 insolico
StrainYersinia pestis Antiqua
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008150
Location864762..909038
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPA_0748860017..861300 [+], 1284108806745putative beta-ketoacyl-(acyl-carrier-protein) synthase 
2YPA_0749861293..862039 [+], 747108806746putative beta-ketoacyl-(acyl-carrier-protein) reductase 
3YPA_0750862055..863293 [+], 1239108806747putative hydroxymethylglutaryl-coenzyme A synthase 
4YPA_0751863286..864005 [+], 720108806748enoyl-CoA hydratase 
5YPA_0752863983..864759 [+], 777108806749polyketide biosynthesis enoyl-CoA hydratase 
6YPA_0753864762..865550 [+], 789108806750putative short chain dehydrogenase 
7YPA_0754865616..866077 [+], 462108806751hypothetical protein 
8YPA_0755866115..866363 [+], 249108806752putative acyl carrier protein 
9YPA_0756866462..867310 [+], 849108806753putative acyl transferase 
10YPA_0757868022..869044 [+], 1023108806754transposase for insertion sequence IS100 
11YPA_0758869044..869823 [+], 780108806755transposase/IS protein 
12YPA_0759870258..870758 [+], 501108806756hypothetical protein  TssB
13YPA_0760870807..872351 [+], 1545108806757hypothetical protein  TssC
14YPA_0761872363..873715 [+], 1353108806758hypothetical protein  TssK
15YPA_0762873712..874398 [+], 687108806759hypothetical protein  TssL
16YPA_0763874398..876134 [+], 1737108806760hypothetical protein  TagL
17YPA_0764876138..876629 [+], 492108806761hypothetical protein  TssD
18YPA_0765877017..879659 [+], 2643108806762putative ATPase subunit of ATP-dependent protease  TssH
19YPA_0766879662..882010 [+], 2349108806763hypothetical protein  TssI
20YPA_0767882095..884326 [+], 2232108806764hypothetical protein 
21YPA_0768884323..885096 [+], 774108806765hypothetical protein 
22YPA_0769885250..885510 [+], 261108806766hypothetical protein 
23YPA_0770885526..887709 [+], 2184108806767hypothetical protein 
24YPA_0771887882..888352 [+], 471108806768hypothetical protein 
25YPA_0772888817..888954 [-], 138108806769putative transposase 
26YPA_0773889085..889405 [-], 321108806770putative transposase 
27YPA_0774889514..889687 [-], 174108806771IS630 orf 
28YPA_0775890517..891749 [+], 1233108806772hypothetical protein 
29YPA_0776891746..895168 [+], 3423108806773hypothetical protein  TssM
30YPA_0777895212..896498 [+], 1287108806774hypothetical protein  TssA
31YPA_0778896550..896813 [+], 264108806775hypothetical protein 
32YPA_0779896831..897889 [+], 1059108806776hypothetical protein  PAAR
33YPA_0780897904..898359 [+], 456108806777hypothetical protein 
34YPA_0781898580..900343 [+], 1764108806778hypothetical protein  TssF
35YPA_0782900307..901392 [+], 1086108806779hypothetical protein  TssG
36YPA_0783901268..901948 [+], 681108806780hypothetical protein  TssJ
37YPA_0784901948..902400 [+], 453108806781hypothetical protein  TssE
38YPA_0785902425..903792 [+], 1368108806782hypothetical protein  TssA
39YPA_0786904004..904627 [-], 624108806783hypothetical protein 
40YPA_0787905142..906905 [+], 1764108806784ABC transporter ATP-binding protein 
41YPA_0788907133..907786 [+], 654108806785hypothetical protein 
42YPA_0789907830..909038 [-], 1209108806786transposase for the IS285 insertion element 
43YPA_0790909174..909944 [-], 771108806787molybdopterin biosynthesis protein MoeB 
44YPA_0791909946..911220 [-], 1275108806788molybdopterin biosynthesis protein MoeA 
45YPA_0792911755..913065 [-], 1311108806789putative heme-binding protein 
46YPA_0793913075..913743 [-], 669108806790ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPA_0764876138..876629 [+], 492108806761hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A