SecReT6
I. Summary
SecReT6 ID139 insolico
StrainYersinia pestis Antiqua
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008150
Location3782417..3820452
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101330001
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPA_33893781038..3781280 [+], 243108809380hypothetical protein 
2YPA_33903781824..3782237 [+], 414108809381hypothetical protein 
3YPA_33913782417..3783787 [-], 1371108809382Sodium:sulfate symporter 
4YPA_33923784069..3785088 [-], 1020108809383LacI-family regulatory protein 
5YPA_33933785370..3786545 [+], 1176108809384hypothetical protein 
6YPA_33943786435..3787220 [-], 786108809385transposase for insertion sequence IS1661 
7YPA_33953787274..3787921 [-], 648108809386insertion element IS1661 DNA-binding protein 
8YPA_33963787840..3788583 [+], 744108809387hypothetical protein  TssF
9YPA_33973788547..3789635 [+], 1089108809388hypothetical protein  TssG
10YPA_33983789761..3791077 [+], 1317108809389hypothetical protein  Fha
11YPA_33993791077..3791622 [+], 546108809390putative lipoprotein  TssJ
12YPA_34003791625..3792971 [+], 1347108809391hypothetical protein  TssK
13YPA_34013792971..3793738 [+], 768108809392hypothetical protein  TssL
14YPA_34023793749..3796352 [+], 2604108809393Clp ATPase  TssH
15YPA_34033796349..3797146 [+], 798108809394hypothetical protein 
16YPA_34043797143..3797829 [+], 687108809395hypothetical protein 
17YPA_34053797835..3799223 [+], 1389108809396hypothetical protein  TssA
18YPA_34063799255..3802788 [+], 3534108809397hypothetical protein  TssM
19YPA_34073802913..3803695 [+], 783108809398hypothetical protein  TssA
20YPA_34083803602..3804225 [+], 624108809399hypothetical protein  TssA
21YPA_34093804247..3806649 [+], 2403108809400putative Rhs accessory genetic element  TssI
22YPA_34103806655..3807113 [+], 459108809401hypothetical protein 
23YPA_34113807106..3809970 [+], 2865108809402hypothetical protein  PAAR
24YPA_34123809998..3811368 [+], 1371108809403hypothetical protein 
25YPA_34133811370..3811855 [+], 486108809404hypothetical protein 
26YPA_34143811905..3812096 [-], 192108809405hypothetical protein 
27YPA_34153812172..3812396 [-], 225108809406hypothetical protein 
28YPA_34163812478..3812885 [-], 408108809407putative transcriptional regulator 
29YPA_34173813048..3813224 [+], 177108809408hypothetical protein 
30YPA_34183813246..3815444 [+], 2199108809409putative Rhs accessory genetic element  TssI
31YPA_34193815447..3815869 [+], 423108809410hypothetical protein 
32YPA_34203815914..3820452 [+], 4539108809411hypothetical protein  PAAR
33YPA_34213820461..3821255 [+], 795108809412hypothetical protein 
34YPA_34223821602..3822501 [-], 900108809413hypothetical protein 
35YPA_34233822498..3822869 [-], 372108809414putative oxidoreductase 
36YPA_34243822908..3823687 [-], 780108809415transposase/IS protein 
37YPA_34253823687..3824709 [-], 1023108809416transposase for insertion sequence IS100 
38YPA_34263824799..3825350 [+], 552108809417putative acetyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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