SecReT6
I. Summary
SecReT6 ID140 insolico
StrainYersinia pestis Antiqua
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008150
Location4000494..4031883
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111100111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPA_3573 (tbpA)3996190..3997182 [+], 993162100157thiamine transporter substrate binding subunit 
2YPA_3574 (thiP)3997146..3998765 [+], 1620108809565thiamine transporter membrane protein 
3YPA_3575 (thiQ)3998752..3999462 [+], 711108809566thiamine transporter ATP-binding subunit 
4YPA_35763999531..4000298 [-], 768108809567DedA family membrane protein 
5YPA_35774000494..4002863 [+], 2370108809568DNA polymerase II 
6YPA_35784003308..4006214 [+], 2907108809569ATP-dependent helicase HepA 
7YPA_35794006470..4006823 [-], 354108809570hypothetical protein 
8YPA_35804006845..4010339 [-], 3495108809571hypothetical protein  TssM
9YPA_35814010348..4011958 [-], 1611108809572hypothetical protein  TssL
10YPA_35824011955..4013310 [-], 1356108809573hypothetical protein  TssK
11YPA_35834013430..4013921 [-], 492108809574putative lipoprotein  TssJ
12YPA_35844013914..4014279 [-], 366108809575hypothetical protein  PAAR
13YPA_35854014285..4014902 [-], 618108809576hypothetical protein 
14YPA_35864014895..4015998 [-], 1104108809577hypothetical protein 
15YPA_35874016024..4017613 [-], 1590108809578hypothetical protein 
16YPA_35884017671..4018243 [-], 573108809579hypothetical protein 
17YPA_35894018256..4020595 [-], 2340108809580hypothetical protein  TssI
18YPA_35904020699..4023287 [-], 2589108809581putative Clp ATPase  TssH
19YPA_35914023305..4024288 [-], 984108809582hypothetical protein  TssG
20YPA_35924024281..4026125 [-], 1845108809583hypothetical protein  TssF
21YPA_35934026158..4026601 [-], 444108809584hypothetical protein  TssE
22YPA_35944026675..4027193 [-], 519108809585hypothetical protein  TssD
23YPA_35954027356..4028261 [-], 906108809586hypothetical protein  TssC
24YPA_35964028318..4029340 [+], 1023108809587transposase for insertion sequence IS100 
25YPA_35974029340..4030119 [+], 780108809588transposase/IS protein 
26YPA_35984030129..4030419 [-], 291108809589hypothetical protein 
27YPA_35994030784..4031539 [-], 756108809590putative transposase 
28YPA_36004031617..4031883 [-], 267108809591helix-turn-helix, Fis-type 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3558 , YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPA_35894018256..4020595 [-], 2340108809580hypothetical protein YPK_3558
2YPA_35944026675..4027193 [-], 519108809585hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A