SecReT6
I. Summary
SecReT6 ID154 insolico
StrainBurkholderia cenocepacia HI2424
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_008542
Location499546..550557
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcen2424_0450495319..495774 [+], 456116688474hypothetical protein 
2Bcen2424_0451496114..496842 [-], 729116688475hypothetical protein 
3Bcen2424_0452497082..497807 [+], 726116688476hypothetical protein 
4Bcen2424_0453497867..498466 [+], 600116688477hypothetical protein 
5Bcen2424_0454499546..501162 [+], 1617116688478phage protein 
6Bcen2424_0455501276..502160 [+], 885116688479hypothetical protein 
7Bcen2424_0456502224..503174 [+], 951116688480hypothetical protein 
8Bcen2424_0457503892..504095 [+], 204116688481hypothetical protein 
9Bcen2424_0458504205..505005 [-], 801116688482extracellular solute-binding protein 
10Bcen2424_0459505362..508553 [+], 3192116688483Rhs element Vgr protein  TssI
11Bcen2424_0460508605..513260 [+], 4656116688484YD repeat-containing protein 
12Bcen2424_0461513271..513846 [+], 576116688485hypothetical protein 
13Bcen2424_0462514382..514699 [+], 318116688486hypothetical protein 
14Bcen2424_0463514786..515568 [-], 783116688487hypothetical protein  TssL
15Bcen2424_0464515565..516911 [-], 1347116688488hypothetical protein  TssK
16Bcen2424_0465517014..517625 [-], 612116688489hypothetical protein  TssJ
17Bcen2424_0466517998..518633 [+], 636116688490TPR repeat-containing protein 
18Bcen2424_0467518680..519195 [+], 516116688491hypothetical protein  TssB
19Bcen2424_0468519211..520701 [+], 1491116688492hypothetical protein  TssC
20Bcen2424_0469520772..521275 [+], 504116688493hypothetical protein  TssD
21Bcen2424_0470521338..521823 [+], 486116688494hypothetical protein  TssE
22Bcen2424_0471521900..523735 [+], 1836116688495hypothetical protein  TssF
23Bcen2424_0472523699..524799 [+], 1101116688496hypothetical protein  TssG
24Bcen2424_0473524841..527510 [+], 2670116688497ATPase  TssH
25Bcen2424_0474527554..528675 [+], 1122116688498ImpA domain-containing protein  TssA
26Bcen2424_0475528742..531303 [+], 2562116688499Rhs element Vgr protein  TssI
27Bcen2424_0476531303..532343 [+], 1041116688500hypothetical protein 
28Bcen2424_0477532330..533166 [+], 837116688501hypothetical protein 
29Bcen2424_0478533386..534321 [+], 936116688502hypothetical protein 
30Bcen2424_0479534308..536569 [+], 2262116688503hypothetical protein 
31Bcen2424_0480536652..536909 [-], 258116688504OmpA/MotB domain-containing protein  TagL
32Bcen2424_0481537086..537955 [+], 870116688505hypothetical protein 
33Bcen2424_0482537988..538608 [+], 621116688506hypothetical protein 
34Bcen2424_0483538876..539826 [-], 951116688507OmpA/MotB domain-containing protein  TagL
35Bcen2424_0484539831..540820 [-], 990116688508hypothetical protein 
36Bcen2424_0485540817..544761 [-], 3945116688509ImcF domain-containing protein  TssM
37Bcen2424_0486545063..545908 [-], 846116688510peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins 
38Bcen2424_0487546030..547034 [+], 1005116688511hypothetical protein 
39Bcen2424_0488547247..548275 [+], 1029116688512Mg2+ transporter protein, CorA family protein 
40Bcen2424_0489548319..548471 [-], 153116688513hypothetical protein 
41Bcen2424_0490548496..549473 [-], 978116688514alcohol dehydrogenase 
42Bcen2424_0491549637..550557 [+], 921116688515LysR family transcriptional regulator 
43Bcen2424_0492550679..552847 [-], 2169116688516peptidase M1, membrane alanine aminopeptidase 
44Bcen2424_0493552952..553209 [-], 258116688517hypothetical protein 
45Bcen2424_0494553491..553985 [+], 495116688518hypothetical protein 
46Bcen2424_0495554141..554473 [+], 333116688519hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bcen2424_0469520772..521275 [+], 504116688493hypothetical protein BCAL0343

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation