SecReT6
I. Summary
SecReT6 ID163 insolico
StrainMarinobacter aquaeolei VT8
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_008740
Location4117842..4161952
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Maqu_37114113225..4113893 [-], 669120556616hypothetical protein 
2Maqu_37124114177..4115121 [-], 945120556617transposase, IS4 family protein 
3Maqu_37134115385..4115675 [-], 291120556618hypothetical protein 
4Maqu_37144115948..4117114 [-], 1167120556619hypothetical protein 
5Maqu_37154117119..4117730 [-], 612120556620hypothetical protein 
6Maqu_37164117842..4118897 [-], 1056120556621hypothetical protein 
7Maqu_37174118887..4122924 [-], 4038120556622hypothetical protein 
8Maqu_37184122964..4123506 [-], 543120556623hypothetical protein 
9Maqu_37194123522..4125693 [-], 2172120556624Rhs element Vgr protein  TssI
10Maqu_37204125749..4129333 [-], 3585120556625Fis family transcriptional regulator  TssM
11Maqu_37214129370..4130818 [-], 1449120556626ImpA domain-containing protein  TssA
12Maqu_37224130830..4131465 [-], 636120556627hypothetical protein 
13Maqu_37234131462..4133027 [-], 1566120556628sigma-54 dependent trancsriptional regulator 
14Maqu_37244133204..4135891 [-], 2688120556629ATPase  TssH
15Maqu_37254135857..4136678 [-], 822120556630hypothetical protein  TssL
16Maqu_37264136682..4138016 [-], 1335120556631hypothetical protein  TssK
17Maqu_37274138016..4138549 [-], 534120556632hypothetical protein  TssJ
18Maqu_37284138546..4139856 [-], 1311120556633FHA domain-containing protein  Fha
19Maqu_37294139874..4140890 [-], 1017120556634hypothetical protein  TssG
20Maqu_37304140854..4142626 [-], 1773120556635hypothetical protein  TssF
21Maqu_37314142925..4143362 [-], 438120556636hypothetical protein  TssE
22Maqu_37324143366..4144847 [-], 1482120556637hypothetical protein  TssC
23Maqu_37334144909..4145406 [-], 498120556638hypothetical protein  TssB
24Maqu_37344145679..4145939 [+], 261120556639acyl-CoA-binding protein 
25Maqu_37354146064..4146378 [+], 315120556640integrase 
26Maqu_37364146401..4146847 [-], 447120556641hypothetical protein 
27Maqu_37374146964..4147479 [-], 516120556642transcription elongation factor GreB 
28Maqu_37384147761..4148042 [+], 282120556643hypothetical protein 
29Maqu_37394148045..4149523 [-], 1479120556644integral membrane sensor signal transduction histidine kinase 
30Maqu_37404149510..4150190 [-], 681120556645two component transcriptional regulator 
31Maqu_37414150294..4151073 [-], 780120556646hydroxypyruvate isomerase 
32Maqu_37424151094..4152005 [-], 9121205566472-hydroxy-3-oxopropionate reductase 
33Maqu_37434152247..4153107 [-], 861120556648RNA polymerase factor sigma-32 
34Maqu_37444153300..4154175 [-], 876120556649hypothetical protein 
35Maqu_37454154294..4154968 [-], 675120556650cell division ATP-binding protein FtsE 
36Maqu_37464154996..4156213 [-], 1218120556651signal recognition particle-docking protein FtsY 
37Maqu_37474156418..4157053 [+], 636120556652putative methyltransferase 
38Maqu_37484157091..4158269 [-], 1179120556653fatty acid desaturase 
39Maqu_37494158457..4159269 [+], 813120556654formamidopyrimidine-DNA glycosylase 
40Maqu_37504159446..4159778 [+], 333120556655hypothetical protein 
41Maqu_37514159865..4160554 [+], 690120556656HAD family hydrolase 
42Maqu_37524160603..4161010 [+], 408120556657RNA-binding S4 domain-containing protein 
43Maqu_37534161098..4161952 [+], 855120556658Hsp33 protein 
44Maqu_37544162127..4163662 [+], 1536120556659phosphoenolpyruvate carboxykinase 
45Maqu_37554163693..4164898 [-], 1206120556660transposase, IS204/IS1001/IS1096/IS1165 family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Maqu_0180218118..218636 [-], 519120553123hypothetical protein ECA2866

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation