SecReT6
I. Summary
SecReT6 ID166 insolico
StrainBurkholderia mallei SAVP1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_008784
Location738250..764521
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111210111
ComponentTssGTssJTssKTssM
Number1122
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMASAVP1_0722 (rhlB-1)733797..735116 [-], 1320121596684rhamnosyltransferase I, subunit B 
2BMASAVP1_0723735006..735296 [+], 291121597935hypothetical protein 
3BMASAVP1_0724 (rhlA-1)735338..736174 [-], 837121596963rhamnosyltransferase I, subunit A 
4BMASAVP1_0725736611..736751 [-], 141121597212hypothetical protein 
5BMASAVP1_0726736788..737063 [-], 276121597872hypothetical protein 
6BMASAVP1_0727737062..737184 [+], 123121596717hypothetical protein 
7BMASAVP1_0728737384..737809 [-], 426121597446hypothetical protein 
8BMASAVP1_0729737832..738191 [-], 360121597898hypothetical protein 
9BMASAVP1_0730738250..740436 [-], 2187121596911hypothetical protein  TssM
10BMASAVP1_0731740418..741749 [-], 1332121596763hypothetical protein  TssM
11BMASAVP1_0732741746..743404 [-], 1659121597986hypothetical protein  TssL
12BMASAVP1_0733743487..744095 [-], 609121597348hypothetical protein  TssK
13BMASAVP1_0734744114..745259 [-], 1146121596645hypothetical protein  TssK
14BMASAVP1_0735744845..745438 [-], 594121597609lipoprotein  TssJ
15BMASAVP1_0736745444..745833 [-], 390121596828hypothetical protein 
16BMASAVP1_0737745876..746586 [-], 711121596957hypothetical protein 
17BMASAVP1_0738746595..747665 [-], 1071121598008pentapeptide repeat-containing protein 
18BMASAVP1_0739747665..749881 [-], 2217121597473hypothetical protein 
19BMASAVP1_0740749885..752173 [-], 2289121597388Rhs element Vgr protein  TssI
20BMASAVP1_0741752339..754585 [-], 2247121597383Rhs element Vgr protein  TssI
21BMASAVP1_0742754576..757245 [-], 2670121596586ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
22BMASAVP1_0743757315..757446 [-], 132121597157ATP-dependent Clp protease, ATP-binding subunit ClpB 
23BMASAVP1_0744757449..758438 [-], 990121598156hypothetical protein  TssG
24BMASAVP1_0745758435..760297 [-], 1863121597956hypothetical protein  TssF
25BMASAVP1_0746760311..760742 [-], 432121596726hypothetical protein  TssE
26BMASAVP1_0747760822..761349 [-], 528121597741hypothetical protein  TssD
27BMASAVP1_0748761493..762998 [-], 1506121596777hypothetical protein  TssC
28BMASAVP1_0750763583..764521 [-], 939121597415hypothetical protein  TssA
29BMASAVP1_0751764644..765477 [-], 834121597165transposase 
30BMASAVP1_0752765501..765764 [-], 264121597498transposase subfamily protein 
31BMASAVP1_0753767470..768984 [-], 1515121598120coenzyme A transferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMASAVP1_0747760822..761349 [-], 528121597741hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A