SecReT6
I. Summary
SecReT6 ID167 insolico
StrainBurkholderia mallei SAVP1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_008784
Location922601..944999
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMASAVP1_0908917751..918131 [-], 381121597541hypothetical protein 
2BMASAVP1_0909918172..918831 [-], 660121596792hypothetical protein 
3BMASAVP1_0910919013..920095 [-], 1083121596974hypothetical protein 
4BMASAVP1_0911920092..922569 [-], 2478121597894pentapeptide repeat-containing protein 
5BMASAVP1_0912922601..924928 [-], 2328121596950Rhs element Vgr protein  TssI
6BMASAVP1_0913925000..926103 [-], 1104229008322hypothetical protein  TssA
7BMASAVP1_0914926100..927185 [-], 1086121597221hypothetical protein  TssG
8BMASAVP1_0915927185..929074 [-], 1890121597998hypothetical protein  TssF
9BMASAVP1_0916929105..929686 [-], 582121596609hypothetical protein  TssE
10BMASAVP1_0917929673..930638 [-], 966121597466hypothetical protein  TagJ
11BMASAVP1_0918930635..931381 [-], 747121597283hypothetical protein 
12BMASAVP1_0919931887..932543 [+], 657121597834chaperone, ATP-binding subunit  TssH
13BMASAVP1_0920932540..934810 [+], 2271121596510chaperone ClpB  TssH
14BMASAVP1_0921934846..935427 [+], 582121597454hypothetical protein  TssB
15BMASAVP1_0922935462..936961 [+], 1500121597135hypothetical protein  TssC
16BMASAVP1_0924937078..937563 [+], 486121598142hypothetical protein  TssD
17BMASAVP1_0923937541..937657 [-], 117121598117hypothetical protein 
18BMASAVP1_0925937670..938173 [+], 504121597485hypothetical protein  TssJ
19BMASAVP1_0926938195..939541 [+], 1347121596513hypothetical protein  TssK
20BMASAVP1_0927939630..940895 [+], 1266121597981hypothetical protein  TssL
21BMASAVP1_0928940924..943596 [+], 2673121597230SciS protein  TssM
22BMASAVP1_0929943704..944999 [+], 1296121597790SciS protein  TssM
23BMASAVP1_0930945019..945249 [+], 231121597877hypothetical protein 
24BMASAVP1_0931945565..945714 [-], 150121596897hypothetical protein 
25BMASAVP1_0933945820..947181 [+], 1362121597488LysR family transcriptional regulator 
26BMASAVP1_0932945833..946099 [-], 267121598132hypothetical protein 
27BMASAVP1_0934947424..948350 [-], 927121597713aromatic ring-opening dioxygenase 
28BMASAVP1_0935948405..949400 [-], 996121596603quinone oxidoreductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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