SecReT6
I. Summary
SecReT6 ID168 insolico
StrainBurkholderia mallei SAVP1
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_008784
Location1550354..1573536
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMASAVP1_15861545677..1545862 [-], 186121597706hypothetical protein 
2BMASAVP1_15871545890..1547779 [+], 1890121598122hypothetical protein 
3BMASAVP1_15881547822..1549258 [-], 1437121597531FHA domain-containing protein  Fha
4BMASAVP1_15891549313..1549672 [-], 360121596783lipoprotein 
5BMASAVP1_15901550354..1550872 [+], 519121597771lipoprotein  TssJ
6BMASAVP1_15911550869..1552272 [+], 1404121596990hypothetical protein  TssK
7BMASAVP1_15921552288..1553604 [+], 1317121596826hypothetical protein  TssL
8BMASAVP1_15931553607..1557236 [+], 3630121596568lipoprotein  TssM
9BMASAVP1_15941557233..1557757 [+], 525121597602hypothetical protein 
10BMASAVP1_15951557754..1557906 [+], 153121596790hypothetical protein 
11BMASAVP1_15971557912..1558148 [+], 237121596709hypothetical protein 
12BMASAVP1_15961558133..1558360 [-], 228121597653hypothetical protein 
13BMASAVP1_15981558359..1560947 [+], 2589121598059serine/threonine protein kinase 
14BMASAVP1_15991561000..1562079 [+], 1080121596921hypothetical protein  TssA
15BMASAVP1_16001562142..1562720 [+], 579121596549hypothetical protein  TssB
16BMASAVP1_16011562713..1564221 [+], 1509121597320hypothetical protein  TssC
17BMASAVP1_16021564281..1564772 [+], 492121596796hypothetical protein  TssD
18BMASAVP1_16031564791..1565351 [+], 561121597728hypothetical protein  TssE
19BMASAVP1_16041565356..1567227 [+], 1872121598163hypothetical protein  TssF
20BMASAVP1_16051567224..1568702 [+], 1479121597169hypothetical protein  TssG
21BMASAVP1_16061568681..1571335 [+], 2655121596799ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
22BMASAVP1_16071571332..1573536 [+], 2205121597925Rhs element Vgr protein  TssI
23BMASAVP1_16081573611..1574264 [+], 654121596656hypothetical protein 
24BMASAVP1_16091574206..1575252 [+], 1047121597339hypothetical protein 
25BMASAVP1_16101575280..1576113 [-], 834121597189IS407A, transposase OrfB 
26BMASAVP1_16111576137..1576400 [-], 264121596662IS407A, transposase OrfA 
27BMASAVP1_16121576696..1576968 [+], 273121596995transposase, truncated 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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