SecReT6
I. Summary
SecReT6 ID169 insolico
StrainBurkholderia mallei SAVP1
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_008785
Location46051..59468
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100010011
ComponentTssGTssJTssKTssM
Number1001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMASAVP1_A004642220..43635 [+], 1416121601056TolC family type I secretion outer membrane protein 
2BMASAVP1_A004743846..44802 [-], 957121600266hypothetical protein 
3BMASAVP1_A004844928..45779 [+], 852121599578D-alanyl-D-alanine carboxypeptidase 
4BMASAVP1_A004945930..46043 [+], 114121599312hypothetical protein 
5BMASAVP1_A005046051..49944 [+], 3894121601535hypothetical protein  TssM
6BMASAVP1_A005149941..50930 [+], 990121600428hypothetical protein 
7BMASAVP1_A005250935..51867 [+], 933121600594ompA family protein  TagL
8BMASAVP1_A005352066..53187 [-], 1122121599874hypothetical protein  TssA
9BMASAVP1_A005453277..55970 [-], 2694121599193ClpA/B type protease  TssH
10BMASAVP1_A005556004..57104 [-], 1101121599719hypothetical protein  TssG
11BMASAVP1_A005657068..58906 [-], 1839121601003hypothetical protein  TssF
12BMASAVP1_A005758986..59468 [-], 483121600053hypothetical protein  TssE
13BMASAVP1_A005859607..60440 [-], 834121600215A, transposase OrfB 
14BMASAVP1_A005960464..60727 [-], 264121599265transposase subfamily protein 
15BMASAVP1_A006060800..60919 [-], 120121598732hypothetical protein 
16BMASAVP1_A0061 (ssb)61205..61795 [-], 591121601305single-stranded DNA-binding protein 
17BMASAVP1_A006261909..63096 [-], 1188121599951major facilitator family transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_I0068 , BTH_I2705

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMASAVP1_A34903452445..3452885 [+], 441121600202hypothetical protein BTH_I0068
2BMASAVP1_A13771348743..1351550 [+], 2808121601564Rhs element Vgr protein BTH_I2705

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Proteins        Genes
N/A
N/A