SecReT6
I. Summary
SecReT6 ID173 insolico
StrainBurkholderia mallei NCTC 10229
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_008835
Location1068768..1095067
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111210111
ComponentTssGTssJTssKTssM
Number1121
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10229_1019 (rhlB-1)1064315..1065634 [-], 1320124382937rhamnosyltransferase I, subunit B 
2BMA10229_10201065524..1065814 [+], 291124383278hypothetical protein 
3BMA10229_1021 (rhlA-1)1065856..1066755 [-], 900124382824rhamnosyltransferase I, subunit A 
4BMA10229_10221067306..1067533 [-], 228124382786hypothetical protein 
5BMA10229_10231067580..1067702 [+], 123124382914hypothetical protein 
6BMA10229_10241067902..1068327 [-], 426124382399hypothetical protein 
7BMA10229_10251068350..1068709 [-], 360124382223hypothetical protein 
8BMA10229_10261068768..1072271 [-], 3504124381175hypothetical protein  TssM
9BMA10229_10271072268..1073950 [-], 1683124383073hypothetical protein  TssL
10BMA10229_10281074033..1074641 [-], 609124382613hypothetical protein  TssK
11BMA10229_10291074660..1075394 [-], 735124381453hypothetical protein  TssK
12BMA10229_10301075391..1075984 [-], 594124382086lipoprotein  TssJ
13BMA10229_10311075990..1076379 [-], 390124382314hypothetical protein 
14BMA10229_10321076422..1077138 [-], 717124383214hypothetical protein 
15BMA10229_10331077141..1078211 [-], 1071124381713pentapeptide repeat-containing protein 
16BMA10229_10341078211..1080427 [-], 2217124381218hypothetical protein 
17BMA10229_10351080431..1082719 [-], 2289124382625Rhs element Vgr protein  TssI
18BMA10229_10361082885..1085131 [-], 2247124382197Rhs element Vgr protein  TssI
19BMA10229_10371085122..1087791 [-], 2670124382088chaperone ATPase  TssH
20BMA10229_10381087861..1087992 [-], 132124381620ATP-dependent Clp protease, ATP-binding subunit ClpB 
21BMA10229_10391087995..1088984 [-], 990124383065hypothetical protein  TssG
22BMA10229_10401088981..1090843 [-], 1863124382441hypothetical protein  TssF
23BMA10229_10411090857..1091288 [-], 432124382296hypothetical protein  TssE
24BMA10229_10421091368..1091895 [-], 528124381960hypothetical protein  TssD
25BMA10229_10431092039..1093544 [-], 1506124381639hypothetical protein  TssC
26BMA10229_10451094129..1095067 [-], 939124382529hypothetical protein  TssA
27BMA10229_10461096776..1098290 [-], 1515124382448coenzyme A transferase 
28BMA10229_10471098655..1099344 [+], 690124383044CDP-alcohol phosphatidyltransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA10229_10421091368..1091895 [-], 528124381960hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A