SecReT6
I. Summary
SecReT6 ID174 insolico
StrainBurkholderia mallei NCTC 10229
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_008835
Location1252133..1274531
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number211111111
ComponentTssGTssJTssKTssM
Number1112
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10229_11951247283..1247663 [-], 381124381358hypothetical protein 
2BMA10229_11961247704..1248363 [-], 660124381536hypothetical protein 
3BMA10229_11971248545..1249627 [-], 1083124382034hypothetical protein 
4BMA10229_11981249624..1252101 [-], 2478124382797pentapeptide repeat-containing protein 
5BMA10229_11991252133..1254460 [-], 2328124381484Rhs element Vgr protein  TssI
6BMA10229_12001254532..1255635 [-], 1104229778989hypothetical protein  TssA
7BMA10229_12011255632..1256717 [-], 1086124382422hypothetical protein  TssG
8BMA10229_12021256717..1258606 [-], 1890124382991hypothetical protein  TssF
9BMA10229_12031258637..1259218 [-], 582124381903hypothetical protein  TssE
10BMA10229_12041259205..1260170 [-], 966124383078hypothetical protein  TagJ
11BMA10229_12051260167..1260913 [-], 747124382354hypothetical protein 
12BMA10229_12061261419..1262075 [+], 657124381841ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
13BMA10229_12071262072..1264342 [+], 2271124381650ATP-dependent Clp protease, ATP-binding subunit  TssH
14BMA10229_12081264378..1264959 [+], 582124382847hypothetical protein  TssB
15BMA10229_12091264994..1266493 [+], 1500124382170hypothetical protein  TssC
16BMA10229_12111266610..1267095 [+], 486124381355hypothetical protein  TssD
17BMA10229_12101267073..1267189 [-], 117124381663hypothetical protein 
18BMA10229_12121267202..1267705 [+], 504124382655hypothetical protein  TssJ
19BMA10229_12131267727..1269073 [+], 1347124382472hypothetical protein  TssK
20BMA10229_12141269162..1270427 [+], 1266124381968hypothetical protein  TssL
21BMA10229_12151270456..1273128 [+], 2673124382965ImcF-like family protein  TssM
22BMA10229_12161273236..1274531 [+], 1296124382493hypothetical protein  TssM
23BMA10229_12171274551..1274781 [+], 231124382762hypothetical protein 
24BMA10229_12181275097..1275246 [-], 150124381229hypothetical protein 
25BMA10229_12191275367..1276713 [+], 1347124383244LysR family transcriptional regulator 
26BMA10229_12201276956..1277882 [-], 927124382572aromatic ring-opening dioxygenase 
27BMA10229_12211277937..1278932 [-], 996124382269quinone oxidoreductase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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