SecReT6
I. Summary
SecReT6 ID175 insolico
StrainBurkholderia mallei NCTC 10229
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_008835
Location1813979..1837160
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10229_17711809302..1809487 [-], 186124383154hypothetical protein 
2BMA10229_17721809524..1811404 [+], 1881124382766hypothetical protein 
3BMA10229_17731811447..1812883 [-], 1437124383239FHA domain-containing protein  Fha
4BMA10229_17741812938..1813297 [-], 360124382780lipoprotein 
5BMA10229_17751813979..1814497 [+], 519124381695lipoprotein  TssJ
6BMA10229_17761814494..1815897 [+], 1404124381238hypothetical protein  TssK
7BMA10229_17771815913..1817229 [+], 1317124382978hypothetical protein  TssL
8BMA10229_17781817232..1820861 [+], 3630124383096lipoprotein  TssM
9BMA10229_17801820858..1821763 [+], 906124382369hypothetical protein 
10BMA10229_17791821748..1821975 [-], 228124381868hypothetical protein 
11BMA10229_17811821974..1824571 [+], 2598124381812serine/threonine protein kinase 
12BMA10229_17821824624..1825703 [+], 1080124382503hypothetical protein  TssA
13BMA10229_17831825766..1826344 [+], 579124383307hypothetical protein  TssB
14BMA10229_17841826337..1827845 [+], 1509124381251hypothetical protein  TssC
15BMA10229_17851827905..1828396 [+], 492124381972hypothetical protein  TssD
16BMA10229_17861828415..1828975 [+], 561124382748hypothetical protein  TssE
17BMA10229_17871828980..1830851 [+], 1872124382484hypothetical protein  TssF
18BMA10229_17881830848..1832326 [+], 1479124382985hypothetical protein  TssG
19BMA10229_17891832305..1834959 [+], 2655124381690ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
20BMA10229_17901834956..1837160 [+], 2205124383247Rhs element Vgr protein  TssI
21BMA10229_17911837235..1837888 [+], 654124382757hypothetical protein 
22BMA10229_17921837830..1838876 [+], 1047124381704hypothetical protein 
23BMA10229_17931838904..1839737 [-], 834124381200IS407A, transposase OrfB 
24BMA10229_17941839761..1840024 [-], 264124382950IS407A, transposase OrfA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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