SecReT6
I. Summary
SecReT6 ID176 insolico
StrainBurkholderia mallei NCTC 10229
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_008836
Location1751068..1764461
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100010011
ComponentTssGTssJTssKTssM
Number1001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10229_A1704 (nylA)1746154..1747638 [-], 14851243842666-aminohexanoate-cyclic-dimer hydrolase 
2BMA10229_A17051747741..1748433 [-], 693124384414dienelactone hydrolase 
3BMA10229_A17061748629..1748745 [-], 117124383675hypothetical protein 
4BMA10229_A17071748760..1749743 [+], 9841243862252-nitropropane dioxygenase 
5BMA10229_A17081749809..1750072 [+], 264124385787IS407A, transposase OrfA 
6BMA10229_A17091750096..1750929 [+], 834124385649IS407A, transposase OrfB 
7BMA10229_A17101751068..1751550 [+], 483124384906hypothetical protein  TssE
8BMA10229_A17111751630..1753468 [+], 1839124385829hypothetical protein  TssF
9BMA10229_A17121753432..1754532 [+], 1101124385118hypothetical protein  TssG
10BMA10229_A17131754566..1757235 [+], 2670124384627ClpA/B type protease  TssH
11BMA10229_A17141757325..1758446 [+], 1122124385312hypothetical protein  TssA
12BMA10229_A17151758645..1759577 [-], 933124386056ompA family protein  TagL
13BMA10229_A17161759582..1760571 [-], 990124384833hypothetical protein 
14BMA10229_A17171760568..1764461 [-], 3894124386243hypothetical protein  TssM
15BMA10229_A17181764469..1764582 [-], 114124385540hypothetical protein 
16BMA10229_A17191764733..1765584 [-], 852124384777D-alanyl-D-alanine carboxypeptidase 
17BMA10229_A17201765710..1766666 [+], 957124384108hypothetical protein 
18BMA10229_A17211766877..1768325 [-], 1449124385874TolC family type I secretion outer membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_I2705 , BTH_I0068

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA10229_A0498518772..521579 [-], 2808124383427Rhs element Vgr protein BTH_I2705
2BMA10229_A18181859194..1859634 [-], 441124385996hypothetical protein BTH_I0068

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Proteins        Genes
N/A
N/A