I. Summary
SecReT6 ID177 insolico
StrainRhodobacter sphaeroides ATCC 17029
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rsph17029_3106120056..120982 [+], 927126463865nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 
2Rsph17029_3107120995..122452 [+], 1458126463866dihydropyrimidinase 
3Rsph17029_3108122449..123090 [+], 642126463867Asp/Glu racemase 
4Rsph17029_3109123087..124016 [+], 930126463868LysR family transcriptional regulator 
5Rsph17029_3110124013..124621 [+], 609126463869hypothetical protein 
6Rsph17029_3111124979..126268 [+], 1290126463870hypothetical protein 
7Rsph17029_3112126270..127292 [+], 1023126463871hypothetical protein 
8Rsph17029_3113127285..128376 [+], 10921264638723-oxoacyl-(acyl carrier protein) synthase 
9Rsph17029_3114128373..129374 [+], 1002126463873hypothetical protein 
10Rsph17029_3115129371..130150 [+], 780126463874hypothetical protein 
11Rsph17029_3116130173..130859 [+], 687126463875hypothetical protein 
12Rsph17029_3117130856..131254 [-], 399126463876hypothetical protein 
13Rsph17029_3118131247..133916 [-], 2670126463877ATPase  TssH
14Rsph17029_3119134030..136036 [+], 2007126463878protein kinase 
15Rsph17029_3120136135..137208 [+], 1074126463879ImpA domain-containing protein  TssA
16Rsph17029_3121137227..137757 [+], 531126463880hypothetical protein  TssB
17Rsph17029_3122137760..139271 [+], 1512126463881hypothetical protein  TssC
18Rsph17029_3123139323..139814 [+], 492126463882hypothetical protein  TssD
19Rsph17029_3124139847..140554 [+], 708126463883GPW/gp25 family protein  TssE
20Rsph17029_3125140554..142419 [+], 1866126463884hypothetical protein  TssF
21Rsph17029_3126142383..143381 [+], 999126463885hypothetical protein  TssG
22Rsph17029_3127143375..144604 [+], 1230126463886FHA domain-containing protein  Fha
23Rsph17029_3128144597..145049 [+], 453126463887hypothetical protein  TssJ
24Rsph17029_3129145058..146386 [+], 1329126463888hypothetical protein  TssK
25Rsph17029_3130146451..147812 [+], 1362126463889OmpA/MotB domain-containing protein  TssL
26Rsph17029_3131147812..151333 [+], 3522126463890ImcF domain-containing protein  TssM
27Rsph17029_3132151323..151814 [+], 492126463891hypothetical protein 
28Rsph17029_3133151824..154127 [-], 2304126463892Rhs element Vgr protein  TssI
29Rsph17029_3134154144..156552 [-], 2409126463893hypothetical protein  TssM
30Rsph17029_3135156552..157400 [-], 849126463894hypothetical protein 
31Rsph17029_3136157404..158159 [-], 756126463895protein phosphatase 2C domain-containing protein 
32Rsph17029_3137158302..159066 [+], 765126463896OmpA/MotB domain-containing protein  TagL
33Rsph17029_3138159063..159989 [-], 927126463897hypothetical protein 
34Rsph17029_3139159986..160396 [-], 411126463898hypothetical protein 
35Rsph17029_3140160396..161469 [-], 1074126463899zinc carboxypeptidase A metalloprotease (M14) 
36Rsph17029_3141161704..162018 [+], 315126463900hypothetical protein 
37Rsph17029_3142162028..164943 [+], 2916126463901peptidase C14, caspase catalytic subunit p20 
38Rsph17029_3143164940..165398 [+], 459126463902hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation