SecReT6
I. Summary
SecReT6 ID179 insolico
StrainBurkholderia pseudomallei 668
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009075
Location134811..166883
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS668_A0150130010..130555 [+], 546126443803fimbrial protein 
2BURPS668_A0151130647..131357 [+], 711126444751fimbrial assembly chaperone protein 
3BURPS668_A0152131470..134214 [+], 2745126445438fimbrial usher protein 
4BURPS668_A0153134207..134779 [+], 573126442523major fimbrial subunit protein 
5BURPS668_A0154134811..135500 [+], 690126443462hypothetical protein  TssL
6BURPS668_A0155135503..137179 [+], 1677126444048OmpA family protein  TagL
7BURPS668_A0156137205..137522 [+], 318126444976hypothetical protein 
8BURPS668_A0157137568..138107 [+], 540126445429hypothetical protein  TssB
9BURPS668_A0158138141..139640 [+], 1500126443069hypothetical protein  TssC
10BURPS668_A0159 (sciM)139840..140322 [+], 483126443630SciM protein  TssD
11BURPS668_A0160 (sciN)140360..140992 [+], 633126444172SciN protein  TssJ
12BURPS668_A0161140998..142347 [+], 1350126444660hypothetical protein  TssK
13BURPS668_A0162142344..143645 [+], 1302126444974hypothetical protein  TssL
14BURPS668_A0163143660..147568 [+], 3909126442622ImcF/SciS family protein  TssM
15BURPS668_A0164147599..147721 [+], 123126443482hypothetical protein 
16BURPS668_A0165147758..148327 [+], 570126445376hypothetical protein 
17BURPS668_A0166148425..151217 [+], 2793126442970Rhs element Vgr protein  TssI
18BURPS668_A0167151286..151561 [+], 276126443940Rhs family protein  PAAR
19BURPS668_A0168151574..155026 [+], 3453126444027Rhs1 protein 
20BURPS668_A0169156310..157338 [-], 1029126444936hypothetical protein 
21BURPS668_A0170157393..158463 [-], 1071126442596ImpA-like N-terminal family protein  TssA
22BURPS668_A0171158482..159531 [-], 1050126443395hypothetical protein  TssG
23BURPS668_A0172159528..161408 [-], 1881126442678hypothetical protein  TssF
24BURPS668_A0173161410..161928 [-], 519126444854hypothetical protein  TssE
25BURPS668_A0174161915..162721 [-], 807126444137ImpE/SciE family protein  TagJ
26BURPS668_A0175162753..163808 [-], 1056126444808hypothetical protein 
27BURPS668_A0176163814..163963 [+], 150126444094hypothetical protein 
28BURPS668_A0177164098..164220 [-], 123126443839hypothetical protein 
29BURPS668_A0178 (clpB)164196..166883 [+], 2688126443108chaperone clpB  TssH
30BURPS668_A0179167146..167265 [+], 120126442659hypothetical protein 
31BURPS668_A0180167274..170318 [-], 3045126444558response regulator/sensor histidine kinase 
32BURPS668_A0181170361..170492 [+], 132126442585hypothetical protein 
33BURPS668_A0182170520..170633 [+], 114126444791hypothetical protein 
34BURPS668_A0183170677..170823 [+], 147126443350hypothetical protein 
35BURPS668_A0184171102..171296 [-], 195126442593hypothetical protein 
36BURPS668_A0185171324..171530 [-], 207126445258hypothetical protein 
37BURPS668_A0186171667..171834 [+], 168126444389hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A