SecReT6
I. Summary
SecReT6 ID180 insolico
StrainBurkholderia pseudomallei 668
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009075
Location290104..312507
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS668_A0322285701..286696 [+], 996126442932zinc-binding dehydrogenase family oxidoreductase 
2BURPS668_A0323286751..287677 [+], 927126442505aromatic ring-opening dioxygenase 
3BURPS668_A0324287920..288882 [-], 963126444842LysR family transcriptional regulator 
4BURPS668_A0325288930..289268 [+], 339126445107hypothetical protein 
5BURPS668_A0326289885..290031 [+], 147126444412hypothetical protein 
6BURPS668_A0327290104..294180 [-], 4077126443652ImcF/SciS family protein  TssM
7BURPS668_A0328294209..295474 [-], 1266126443128hypothetical protein  TssL
8BURPS668_A0329295563..296909 [-], 1347126444599hypothetical protein  TssK
9BURPS668_A0330 (sciN)296931..297434 [-], 504126443853SciN protein  TssJ
10BURPS668_A0331 (sciM)297541..298026 [-], 486126444160SciM protein  TssD
11BURPS668_A0333298143..299642 [-], 1500126445449hypothetical protein  TssC
12BURPS668_A0334299677..300258 [-], 582126442861hypothetical protein  TssB
13BURPS668_A0335 (clpB)300294..303221 [-], 2928126442699chaperone clpB  TssH
14BURPS668_A0336303727..304473 [+], 747126443354hypothetical protein 
15BURPS668_A0337304470..305435 [+], 966126444067ImpE/SciE family protein  TagJ
16BURPS668_A0338305422..306003 [+], 582126444802hypothetical protein  TssE
17BURPS668_A0339306034..307923 [+], 1890126442452hypothetical protein  TssF
18BURPS668_A0340307923..309008 [+], 1086126443380hypothetical protein  TssG
19BURPS668_A0341309005..310108 [+], 1104228993424ImpA, N-terminal  TssA
20BURPS668_A0342310180..312507 [+], 2328126445454Rhs element Vgr protein  TssI
21BURPS668_A0343312539..315016 [+], 2478126442493pentapeptide repeat-containing protein 
22BURPS668_A0344315013..316095 [+], 1083126443243pentapeptide repeat-containing protein 
23BURPS668_A0345316092..316280 [+], 189126445493hypothetical protein 
24BURPS668_A0346316277..316936 [+], 660126442863hypothetical protein 
25BURPS668_A0347316977..317357 [+], 381126443498hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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