SecReT6
I. Summary
SecReT6 ID181 insolico
StrainBurkholderia pseudomallei 668
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009075
Location757515..783835
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS668_A0784753227..753916 [-], 690126442649CDP-alcohol phosphatidyltransferase family protein 
2BURPS668_A0785754280..755794 [+], 1515126443289acetyl-CoA hydrolase/transferase family protein 
3BURPS668_A0786755752..755910 [+], 159126444106hypothetical protein 
4BURPS668_A0787755891..756019 [+], 129126444351hypothetical protein 
5BURPS668_A0788757515..758453 [+], 939126445235ImpA-like N-terminal family protein  TssA
6BURPS668_A0789758487..759035 [+], 549126442965hypothetical protein  TssB
7BURPS668_A0790759038..760543 [+], 1506126443866hypothetical protein  TssC
8BURPS668_A0791760687..761214 [+], 528126444888hypothetical protein  TssD
9BURPS668_A0792761294..761725 [+], 432126442544hypothetical protein  TssE
10BURPS668_A0793761739..763601 [+], 1863126443499hypothetical protein  TssF
11BURPS668_A0794763598..764587 [+], 990126444432hypothetical protein  TssG
12BURPS668_A0795764590..767460 [+], 2871126445313putative ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
13BURPS668_A0796767451..769742 [+], 2292126442945Rhs element Vgr protein  TssI
14BURPS668_A0797769908..772196 [+], 2289126443100Rhs element Vgr protein  TssI
15BURPS668_A0798772200..774416 [+], 2217126443461hypothetical protein 
16BURPS668_A0799774416..775486 [+], 1071126443960hypothetical protein 
17BURPS668_A0800775489..776205 [+], 717126442615hypothetical protein 
18BURPS668_A0801776248..776637 [+], 390126443519hypothetical protein 
19BURPS668_A0802776643..777236 [+], 594126443847putative lipoprotein  TssJ
20BURPS668_A0803777233..778594 [+], 1362126444399hypothetical protein  TssK
21BURPS668_A0804778677..780335 [+], 1659126442377hypothetical protein  TssL
22BURPS668_A0805780332..783835 [+], 3504126444923hypothetical protein  TssM
23BURPS668_A0806783894..784253 [+], 360126443838hypothetical protein 
24BURPS668_A0807784276..784707 [+], 432126445029hypothetical protein 
25BURPS668_A0809784983..785303 [+], 321126444396hypothetical protein 
26BURPS668_A0810 (rhlA)785854..786753 [+], 900126443178rhamnosyltransferase I subunit A 
27BURPS668_A0811786795..787097 [-], 303126442952hypothetical protein 
28BURPS668_A0812 (rhlB)786987..788306 [+], 1320126445081rhamnosyltransferase I subunit B 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BURPS668_A0791760687..761214 [+], 528126444888hypothetical protein YPK_3563

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Proteins        Genes
N/A
N/A