SecReT6
I. Summary
SecReT6 ID182 insolico
StrainBurkholderia pseudomallei 668
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009075
Location2053416..2082003
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS668_A21122048521..2048748 [-], 228126444956hemagglutinin domain-containing protein 
2BURPS668_A21132048802..2048924 [-], 123126442406hypothetical protein 
3BURPS668_A21142048921..2049040 [-], 120126442700hypothetical protein 
4BURPS668_A21162049023..2050060 [+], 1038126444105putative N-acetylmuramoyl-L-alanine amidase 
5BURPS668_A21172050188..2051549 [+], 1362126444574glycosyltransferase TibC 
6BURPS668_A21182051578..2052714 [+], 1137126445307hemagglutinin domain-containing protein 
7BURPS668_A21192052794..2053171 [+], 378126442668putative lipoprotein 
8BURPS668_A21202053416..2055323 [-], 1908126443381ImpA-like N-terminal family protein  TssA
9BURPS668_A21212055314..2056051 [-], 738126443848DNA-binding response regulator  VirG
10BURPS668_A21222056048..2057880 [-], 1833126444787sensor histidine kinase  VirA
11BURPS668_A21232058140..2058634 [+], 495126445356hypothetical protein  TssB
12BURPS668_A21242058658..2060157 [+], 1500126444584hypothetical protein  TssC
13BURPS668_A21252060377..2060886 [+], 510126443954hcp protein  TssD
14BURPS668_A21262060879..2061340 [+], 462126445500hypothetical protein  TssE
15BURPS668_A21272061377..2063119 [+], 1743126442545hypothetical protein  TssF
16BURPS668_A21282063107..2064129 [+], 1023126443230hypothetical protein  TssG
17BURPS668_A21292064116..2067136 [+], 3021126443370ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
18BURPS668_A21302067163..2070186 [+], 3024126444285Rhs element Vgr protein  TssI
19BURPS668_A21312070212..2072854 [+], 2643126442866pentapeptide repeat-containing protein 
20BURPS668_A21322072872..2073936 [+], 1065126443656pentapeptide repeat-containing protein 
21BURPS668_A21332074047..2074685 [+], 639126443776hypothetical protein 
22BURPS668_A21342074714..2075106 [+], 393126443298hypothetical protein 
23BURPS668_A21352075116..2075913 [+], 798126443149hypothetical protein  TssJ
24BURPS668_A21362075946..2077343 [+], 1398126442634hypothetical protein  TssK
25BURPS668_A21372077340..2078005 [+], 666126444983hypothetical protein  TssL
26BURPS668_A21382078017..2082003 [+], 3987126444486hypothetical protein  TssM
27BURPS668_A21392082000..2082155 [+], 156126444322hypothetical protein 
28BURPS668_A21402082159..2082344 [-], 186126445049hypothetical protein 
29BURPS668_A21422082514..2083911 [+], 1398126443193hypothetical protein  BMAA0729 (e)
30BURPS668_A21412083865..2084116 [-], 252126442491hypothetical protein 
31BURPS668_A21432084129..2084248 [-], 120126444875hypothetical protein 
32BURPS668_A21462084373..2085005 [+], 633284159999GTP cyclohydrolase I 
33BURPS668_A21472085578..2085754 [-], 177126443511hypothetical protein 
34BURPS668_A21482085732..2086787 [-], 1056126443771AraC-type DNA-binding domain-containing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BMAA0729 , BMAA0742, BMAA0737

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BURPS668_A21422082514..2083911 [+], 1398126443193hypothetical protein BMAA0729
2BURPS668_A21252060377..2060886 [+], 510126443954hcp protein BMAA0742
3BURPS668_A21302067163..2070186 [+], 3024126444285Rhs element Vgr protein BMAA0737

Download FASTA format files
Proteins        Genes
N/A
N/A