SecReT6
I. Summary
SecReT6 ID183 insolico
StrainBurkholderia pseudomallei 668
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009075
Location2802588..2825859
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS668_A29522801307..2802572 [-], 1266126444375hypothetical protein 
2BURPS668_A29532802588..2804792 [-], 2205126443497Rhs element Vgr protein  TssI
3BURPS668_A29542804789..2807455 [-], 2667126442624putative ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
4BURPS668_A29552807434..2808900 [-], 1467126443398hypothetical protein  TssG
5BURPS668_A29562808897..2810768 [-], 1872126442987hypothetical protein  TssF
6BURPS668_A29572810773..2811333 [-], 561126445460hypothetical protein  TssE
7BURPS668_A29582811352..2811843 [-], 492126444537hypothetical protein  TssD
8BURPS668_A29592811903..2813411 [-], 1509126443228hypothetical protein  TssC
9BURPS668_A29602813404..2813982 [-], 579126442318hypothetical protein  TssB
10BURPS668_A29612814045..2815124 [-], 1080126445091ImpA-like N-terminal family protein  TssA
11BURPS668_A29622815177..2817774 [-], 2598126443723protein kinase 
12BURPS668_A29642817773..2818000 [+], 228126442764hypothetical protein 
13BURPS668_A29632817985..2818971 [-], 987126443670hypothetical protein 
14BURPS668_A29652818977..2822606 [-], 3630126445166ImcF-like protein  TssM
15BURPS668_A29662822609..2823925 [-], 1317126443591hypothetical protein  TssL
16BURPS668_A29672823941..2825344 [-], 1404126444080hypothetical protein  TssK
17BURPS668_A29682825341..2825859 [-], 519126443135putative lipoprotein  TssJ
18BURPS668_A29702826541..2826900 [+], 360126445432putative lipoprotein 
19BURPS668_A29712826955..2828388 [+], 1434126445261FHA domain-containing protein  Fha
20BURPS668_A29722828431..2830311 [-], 1881126444448hypothetical protein 
21BURPS668_A29732830342..2830533 [+], 192126442721hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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