SecReT6
I. Summary
SecReT6 ID185 insolico
StrainBurkholderia pseudomallei 1106a
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009078
Location110188..151260
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number112111111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1106A_A0122106790..107197 [+], 408126456087haemagluttinin family protein 
2BURPS1106A_A0123 (pqaA)107264..108715 [-], 1452126458397PqaA protein 
3BURPS1106A_A0124108787..109002 [+], 216126457476hypothetical protein 
4BURPS1106A_A0125 (yfaZ)109013..109465 [-], 453226830795outer membrane protein 
5BURPS1106A_A0126110188..110697 [+], 510126457347fimbrial protein 
6BURPS1106A_A0127110762..111499 [+], 738126456489fimbrial assembly chaperone protein 
7BURPS1106A_A0128111612..114356 [+], 2745126457629fimbrial usher protein 
8BURPS1106A_A0129114349..114921 [+], 573126458042major fimbrial subunit protein 
9BURPS1106A_A0130114953..115642 [+], 690126455750hypothetical protein  TssL
10BURPS1106A_A0131115693..117321 [+], 1629126456220OmpA family protein  TagL
11BURPS1106A_A0132117284..117397 [+], 114126456929hypothetical protein 
12BURPS1106A_A0133117711..118250 [+], 540126457308hypothetical protein  TssB
13BURPS1106A_A0134118284..119783 [+], 1500126457919hypothetical protein  TssC
14BURPS1106A_A0135119787..119939 [+], 153126455880hypothetical protein 
15BURPS1106A_A0136 (sciM)119983..120465 [+], 483126456784SciM protein  TssD
16BURPS1106A_A0137 (sciN)120593..121135 [+], 543126456559SciN protein  TssJ
17BURPS1106A_A0138121132..122490 [+], 1359126456681hypothetical protein  TssK
18BURPS1106A_A0139122487..123788 [+], 1302126457603hypothetical protein  TssL
19BURPS1106A_A0140123803..127711 [+], 3909126457982ImcF/SciS family protein  TssM
20BURPS1106A_A0141127742..127864 [+], 123126456250hypothetical protein 
21BURPS1106A_A0142127901..128470 [+], 570126456361hypothetical protein 
22BURPS1106A_A0143128568..131258 [+], 2691126457271Rhs element Vgr protein  TssI
23BURPS1106A_A0144131327..131602 [+], 276126458070PAAR motif-containing protein  PAAR
24BURPS1106A_A0145131615..135067 [+], 3453126455803YD repeat-/RHS repeat-containing protein 
25BURPS1106A_A0146135974..136150 [+], 177126456464hypothetical protein 
26BURPS1106A_A0147136351..137379 [-], 1029126455537hypothetical protein 
27BURPS1106A_A0148137434..138504 [-], 1071126456359ImpA-related N-terminal family protein  TssA
28BURPS1106A_A0149138523..139572 [-], 1050126458527hypothetical protein  TssG
29BURPS1106A_A0150139569..141449 [-], 1881126456197hypothetical protein  TssF
30BURPS1106A_A0151141451..141969 [-], 519126456785hypothetical protein  TssE
31BURPS1106A_A0152141956..142762 [-], 807126457335ImpE/SciE family protein  TagJ
32BURPS1106A_A0153142794..143849 [-], 1056126458215hypothetical protein 
33BURPS1106A_A0154143908..144036 [-], 129126455511hypothetical protein 
34BURPS1106A_A0155144139..144261 [-], 123126458525hypothetical protein 
35BURPS1106A_A0156 (clpB)144237..146924 [+], 2688126457862chaperone clpB  TssH
36BURPS1106A_A0157146998..147135 [-], 138126457183hypothetical protein 
37BURPS1106A_A0158147187..147306 [+], 120126456486hypothetical protein 
38BURPS1106A_A0159147315..150413 [-], 3099126455824response regulator/sensor histidine kinase 
39BURPS1106A_A0160151144..151260 [-], 117126457506hypothetical protein 
40BURPS1106A_A0161151961..152623 [-], 663126457628LuxR family DNA-binding response regulator 
41BURPS1106A_A0162152735..152896 [-], 162126456924hypothetical protein 
42BURPS1106A_A0163153172..155541 [-], 2370126455641fimbrial usher family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation