SecReT6
I. Summary
SecReT6 ID187 insolico
StrainBurkholderia pseudomallei 1106a
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009078
Location678103..715527
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1106A_A0690 (ppd)673436..674617 [-], 11821264575733-phosphonopyruvate decarboxylase 
2BURPS1106A_A0691674614..676302 [-], 1689126457777phosphoenolpyruvate phosphomutase 
3BURPS1106A_A0692676299..677066 [-], 768126456776hypothetical protein 
4BURPS1106A_A0693677105..678106 [-], 1002126457710hypothetical protein 
5BURPS1106A_A0694678103..678873 [-], 7711264579172OG-Fe(II) oxygenase family oxidoreductase 
6BURPS1106A_A0695678873..679562 [-], 690126455666CDP-alcohol phosphatidyltransferase family protein 
7BURPS1106A_A0696679927..681441 [+], 1515126457343acetyl-CoA hydrolase/transferase family protein 
8BURPS1106A_A0697681538..681666 [+], 129126456039hypothetical protein 
9BURPS1106A_A0698682476..682601 [+], 126126456713hypothetical protein 
10BURPS1106A_A0699683162..684100 [+], 939126457639ImpA-related N-terminal family protein  TssA
11BURPS1106A_A0700684134..684682 [+], 549126457683hypothetical protein  TssB
12BURPS1106A_A0701684685..686190 [+], 1506126458605hypothetical protein  TssC
13BURPS1106A_A0702686334..686861 [+], 528126456659hypothetical protein  TssD
14BURPS1106A_A0703686941..687372 [+], 432126456040hypothetical protein  TssE
15BURPS1106A_A0704687386..689248 [+], 1863126455797hypothetical protein  TssF
16BURPS1106A_A0705689245..690234 [+], 990126458306hypothetical protein  TssG
17BURPS1106A_A0706690237..693107 [+], 2871126457113putative ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
18BURPS1106A_A0707693098..695389 [+], 2292126456440Rhs element Vgr protein  TssI
19BURPS1106A_A0708695412..695543 [-], 132126457609hypothetical protein 
20BURPS1106A_A0709695555..697843 [+], 2289126456731Rhs element Vgr protein  TssI
21BURPS1106A_A0710697847..700063 [+], 2217126456216hypothetical protein 
22BURPS1106A_A0711700063..701133 [+], 1071126458544hypothetical protein 
23BURPS1106A_A0712701136..701852 [+], 717126457880hypothetical protein 
24BURPS1106A_A0713701895..702284 [+], 390126457245hypothetical protein 
25BURPS1106A_A0714702290..702883 [+], 594126456475putative lipoprotein  TssJ
26BURPS1106A_A0715702880..704241 [+], 1362126455771hypothetical protein  TssK
27BURPS1106A_A0716704324..705982 [+], 1659126457957hypothetical protein  TssL
28BURPS1106A_A0717705979..709482 [+], 3504126457252hypothetical protein  TssM
29BURPS1106A_A0718709541..709900 [+], 360126456546hypothetical protein 
30BURPS1106A_A0719709923..710348 [+], 426126455763hypothetical protein 
31BURPS1106A_A0720710548..710670 [-], 123126458342hypothetical protein 
32BURPS1106A_A0721710624..710944 [+], 321126457620hypothetical protein 
33BURPS1106A_A0722710981..711121 [+], 141126457697hypothetical protein 
34BURPS1106A_A0723 (rhlA)711495..712394 [+], 900126456665rhamnosyltransferase I subunit A 
35BURPS1106A_A0724712436..712738 [-], 303126458335hypothetical protein 
36BURPS1106A_A0725 (rhlB)712628..713947 [+], 1320126457580rhamnosyltransferase I subunit B 
37BURPS1106A_A0726713944..715527 [+], 1584126457285EmrB/QacA family drug resistance transporter 
38BURPS1106A_A0727715479..715595 [+], 117126456435hypothetical protein 
39BURPS1106A_A0728715780..716775 [+], 996126457630rhamnosyltransferase 
40BURPS1106A_A0729716901..717083 [+], 183126456611hypothetical protein 
41BURPS1106A_A0730717080..718663 [+], 1584126455696NodT family efflux transporter outer membrane lipoprotein 
42BURPS1106A_A0731718979..719167 [-], 189126458102hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BURPS1106A_A0702686334..686861 [+], 528126456659hypothetical protein YPK_3563

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation