SecReT6
I. Summary
SecReT6 ID189 insolico
StrainBurkholderia pseudomallei 1106a
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009078
Location2762372..2798564
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BURPS1106A_A28182757397..2758596 [-], 1200126457138carbohydrate ABC transporter periplasmic binding protein 
2BURPS1106A_A28192758674..2758862 [-], 189126457967carbohydrate ABC transporter ATP-binding protein 
3BURPS1106A_A28202759337..2759450 [+], 114126456655hypothetical protein 
4BURPS1106A_A28212759961..2761856 [-], 1896126457112hypothetical protein 
5BURPS1106A_A28222762372..2763430 [-], 1059126457614LacI family transcriptional regulator 
6BURPS1106A_A28232763834..2764091 [+], 258126455729transposase 
7BURPS1106A_A28242764868..2765608 [+], 741126458456hypothetical protein 
8BURPS1106A_A28252766040..2766153 [-], 114126456337hypothetical protein 
9BURPS1106A_A28262766340..2767599 [-], 1260126457855substrate-binding repeat-containing protein 
10BURPS1106A_A28272767559..2768269 [-], 711126457149hypothetical protein 
11BURPS1106A_A28282768285..2770489 [-], 2205126456235Rhs element Vgr protein  TssI
12BURPS1106A_A28292770486..2773152 [-], 2667126458366putative ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
13BURPS1106A_A28302773165..2774610 [-], 1446126457633hypothetical protein  TssG
14BURPS1106A_A28312774607..2776478 [-], 1872126456530hypothetical protein  TssF
15BURPS1106A_A28322776483..2777019 [-], 537126455831hypothetical protein  TssE
16BURPS1106A_A28332777050..2777541 [-], 492126457925hypothetical protein  TssD
17BURPS1106A_A28342777601..2779109 [-], 1509126455835hypothetical protein  TssC
18BURPS1106A_A28352779102..2779680 [-], 579126457921hypothetical protein  TssB
19BURPS1106A_A28362779743..2780822 [-], 1080126456923ImpA-related N-terminal family protein  TssA
20BURPS1106A_A28372780875..2783460 [-], 2586126457834protein kinase 
21BURPS1106A_A28392783459..2783686 [+], 228126455995hypothetical protein 
22BURPS1106A_A28382783671..2784654 [-], 984126458310hypothetical protein 
23BURPS1106A_A28402784636..2788265 [-], 3630126455694ImcF-related protein  TssM
24BURPS1106A_A28412788268..2789584 [-], 1317126458045hypothetical protein  TssL
25BURPS1106A_A28422789600..2791003 [-], 1404126455944hypothetical protein  TssK
26BURPS1106A_A28432791000..2791518 [-], 519126456983putative lipoprotein  TssJ
27BURPS1106A_A28442791714..2791974 [-], 261126457525hypothetical protein 
28BURPS1106A_A28452792200..2792559 [+], 360126457322putative lipoprotein 
29BURPS1106A_A28462792614..2794050 [+], 1437126457060FHA domain-containing protein  Fha
30BURPS1106A_A28472794094..2795998 [-], 1905126457093hypothetical protein 
31BURPS1106A_A28482796017..2796202 [+], 186126456615hypothetical protein 
32BURPS1106A_A28492796468..2797712 [+], 1245126455717hypothetical protein 
33BURPS1106A_A28502797917..2798042 [-], 126126458429hypothetical protein 
34BURPS1106A_A28512798022..2798339 [+], 318126458060chorismate lyase 
35BURPS1106A_A28522798388..2798564 [+], 177126455799hypothetical protein 
36BURPS1106A_A28532799066..2799770 [-], 705126456687short chain dehydrogenase/reductase family oxidoreductase 
37BURPS1106A_A28542799910..2800023 [-], 114126458497hypothetical protein 
38BURPS1106A_A28552799952..2800866 [+], 915126458455LysR family transcriptional regulator 
39BURPS1106A_A2856 (dsdA)2801022..2802359 [-], 1338126456246D-serine dehydratase 
40BURPS1106A_A28572802317..2802451 [-], 135126455624hypothetical protein 
41BURPS1106A_A28582802456..2803397 [+], 942126458495LysR family transcriptional regulator 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation