SecReT6
I. Summary
SecReT6 ID19 insolico
StrainYersinia pestis CO92
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_003143
Location1651381..1695174
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPO14531647014..1647334 [+], 321218928596hypothetical protein 
2YPO14541647664..1648122 [+], 459218928597(3R)-hydroxymyristoyl-ACP dehydratase 
3YPO14551648112..1649395 [+], 1284218928598beta-ketoacyl-ACP synthase 
4YPO14561649388..1650134 [+], 7472189285993-ketoacyl-ACP reductase 
5YPO14571650150..1651388 [+], 1239218928600hydroxymethylglutaryl-coenzyme A synthase 
6YPO14581651381..1652100 [+], 720218928601enoyl-CoA hydratase 
7YPO14591652093..1652854 [+], 762218928602polyketide biosynthesis enoyl-CoA hydratase 
8YPO14601652857..1653645 [+], 789218928603short chain dehydrogenase 
9YPO14611653684..1654172 [+], 489218928604hypothetical protein 
10YPO14621654210..1654458 [+], 249218928605acyl carrier protein 
11YPO14631654557..1655405 [+], 849218928606acyl transferase 
12YPO14641655562..1655729 [+], 168218928607hypothetical protein 
13YPO14651656394..1656894 [+], 501218928608hypothetical protein  TssB
14YPO14661656937..1658487 [+], 1551218928609hypothetical protein  TssC
15YPO14671658499..1659851 [+], 1353218928610hypothetical protein  TssK
16YPO14681659848..1660534 [+], 687218928611hypothetical protein  TssL
17YPO14691660534..1662270 [+], 1737218928612hypothetical protein  TagL
18YPO14701662274..1662765 [+], 492218928613hypothetical protein  TssD
19YPO14711663153..1665795 [+], 2643218928614ATPase subunit of ATP-dependent protease  TssH
20YPO14721665798..1668146 [+], 2349218928615hypothetical protein  TssI
21YPO14731668162..1670462 [+], 2301218928616hypothetical protein 
22YPO14741670459..1671232 [+], 774218928617hypothetical protein 
23YPO14751671386..1671646 [+], 261218928618hypothetical protein 
24YPO14761671662..1673845 [+], 2184218928619hypothetical protein 
25YPO14771674018..1674488 [+], 471218928620hypothetical protein 
26YPO14811676764..1677885 [+], 1122218928621hypothetical protein 
27YPO14821677882..1681304 [+], 3423218928622hypothetical protein  TssM
28YPO14831681348..1682949 [+], 1602218928623hypothetical protein  TssA
29YPO14841682940..1684025 [+], 1086218928624hypothetical protein  PAAR
30YPO1484a1684025..1684495 [+], 471218928625hypothetical protein 
31YPO14851684716..1686479 [+], 1764218928626hypothetical protein  TssF
32YPO14861686443..1687528 [+], 1086218928627hypothetical protein  TssG
33YPO14871687596..1688084 [+], 489218928628hypothetical protein  TssJ
34YPO14881688084..1688536 [+], 453218928629hypothetical protein  TssE
35YPO14891688561..1689928 [+], 1368218928630hypothetical protein  TssA
36YPO14901690140..1690763 [-], 624218928631hypothetical protein 
37YPO1491 (ybiT)1691446..1693041 [+], 1596218928632ABC transporter ATP-binding protein 
38YPO14921693269..1693922 [+], 654218928633hypothetical protein 
39YPO1493 (y1062)1693966..1695174 [-], 1209218928634transposase 
40YPO1494 (moeB)1695310..1696077 [-], 768218928635molybdopterin biosynthesis protein MoeB 
41YPO1495 (moeA)1696082..1697356 [-], 1275218928636molybdopterin biosynthesis protein MoeA 
42YPO14961697891..1699201 [-], 1311218928637heme-binding protein 
43YPO14971699211..1699879 [-], 669218928638ABC transporter ATP-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPO14701662274..1662765 [+], 492218928613hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation