SecReT6
I. Summary
SecReT6 ID190 insolico
StrainBurkholderia mallei NCTC 10247
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009079
Location386022..409203
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10247_A0440381345..381530 [-], 186126445960hypothetical protein 
2BMA10247_A0441381567..383447 [+], 1881126446621hypothetical protein 
3BMA10247_A0442383490..384926 [-], 1437126446867FHA domain-containing protein  Fha
4BMA10247_A0443384981..385340 [-], 360126447471putative lipoprotein 
5BMA10247_A0444385686..385826 [+], 141126445881hypothetical protein 
6BMA10247_A0445386022..386540 [+], 519126446334putative lipoprotein  TssJ
7BMA10247_A0446386537..387940 [+], 1404126446595hypothetical protein  TssK
8BMA10247_A0447387956..389272 [+], 1317126447095hypothetical protein  TssL
9BMA10247_A0448389275..392904 [+], 3630126447517ImcF-like protein  TssM
10BMA10247_A0450392901..393806 [+], 906262192878hypothetical protein 
11BMA10247_A0449393791..394018 [-], 228126446724hypothetical protein 
12BMA10247_A0451394056..396614 [+], 2559126446019serine/threonine protein kinase 
13BMA10247_A0452396667..397746 [+], 1080126447482ImpA-related N-terminal family protein  TssA
14BMA10247_A0453397809..398387 [+], 579126447080hypothetical protein  TssB
15BMA10247_A0454398380..399888 [+], 1509126446911hypothetical protein  TssC
16BMA10247_A0455399948..400439 [+], 492126447416hypothetical protein  TssD
17BMA10247_A0456400458..401018 [+], 561126446113hypothetical protein  TssE
18BMA10247_A0457401023..402894 [+], 1872126446670hypothetical protein  TssF
19BMA10247_A0458402891..404369 [+], 1479126446426hypothetical protein  TssG
20BMA10247_A0459404348..407002 [+], 2655126447004putative ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
21BMA10247_A0460406999..409203 [+], 2205126447176Rhs element Vgr protein  TssI
22BMA10247_A0462409861..410919 [+], 1059262192865YD repeat-containing protein 
23BMA10247_A0463410947..411780 [-], 834126446128IS407A, transposase OrfB 
24BMA10247_A0464411804..412067 [-], 264126447081IS407A, transposase OrfA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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