SecReT6
I. Summary
SecReT6 ID191 insolico
StrainBurkholderia mallei NCTC 10247
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009079
Location1605669..1634331
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10247_A16621601200..1602225 [+], 1026126446345N-acetylmuramoyl-L-alanine amidase domain-containing protein 
2BMA10247_A16631602436..1602591 [-], 156126445758hypothetical protein 
3BMA10247_A16641602513..1603733 [+], 1221126447510hypothetical protein 
4BMA10247_A1666 (bimA)1603762..1604883 [+], 1122262192864intracellular motility protein A 
5BMA10247_A16671604963..1605340 [+], 378126446042putative lipoprotein 
6BMA10247_A16681605669..1607630 [-], 1962126447767ImpA-related N-terminal family protein  TssA
7BMA10247_A1669 (virG)1607621..1608358 [-], 738126447328DNA-binding response regulator  VirG
8BMA10247_A16701608355..1610199 [-], 1845126446436sensor histidine kinase  VirA
9BMA10247_A16721610459..1610953 [+], 495126446101hypothetical protein  TssB
10BMA10247_A16731610950..1612476 [+], 1527126446866hypothetical protein  TssC
11BMA10247_A16741612560..1612697 [-], 138126447268hypothetical protein 
12BMA10247_A16751612696..1613205 [+], 510126446753hcp protein  TssD
13BMA10247_A16761613198..1613659 [+], 462126445951hypothetical protein  TssE
14BMA10247_A16771613696..1615438 [+], 1743126447821hypothetical protein  TssF
15BMA10247_A16781615426..1616448 [+], 1023126447024hypothetical protein  TssG
16BMA10247_A16791616435..1619482 [+], 3048126446506ATP-dependent Clp protease, ATP-binding subunit ClpB  TssH
17BMA10247_A16801619509..1622532 [+], 3024126445998Rhs element Vgr protein  TssI
18BMA10247_A16811622558..1625200 [+], 2643126447541pentapeptide repeat-containing protein 
19BMA10247_A16821625218..1626282 [+], 1065126447036hypothetical protein 
20BMA10247_A16831626279..1627040 [+], 762262192869hypothetical protein 
21BMA10247_A16841627069..1627461 [+], 393126446964hypothetical protein 
22BMA10247_A16851627471..1628268 [+], 798126447629hypothetical protein  TssJ
23BMA10247_A16861628301..1629698 [+], 1398126445588hypothetical protein  TssK
24BMA10247_A16871629695..1630360 [+], 666126446795hypothetical protein  TssL
25BMA10247_A16881630372..1634331 [+], 3960126447493hypothetical protein  TssM
26BMA10247_A16891634347..1634505 [+], 159126447848hypothetical protein 
27BMA10247_A16901634509..1634694 [-], 186126446080hypothetical protein 
28BMA10247_A16911634730..1634912 [-], 183126447312hypothetical protein 
29BMA10247_A16921635190..1635585 [-], 396126447686hypothetical protein 
30BMA10247_A16941635617..1636288 [+], 672126445656hypothetical protein 
31BMA10247_A16931636248..1636493 [-], 246126447628hypothetical protein 
32BMA10247_A16951636506..1636625 [-], 120126446575hypothetical protein 
33BMA10247_A16981636699..1637382 [+], 684262192868GTP cyclohydrolase I 
34BMA10247_A17001637976..1638239 [+], 264126447942IS407A, transposase OrfA 
35BMA10247_A17011638263..1639096 [+], 834126446822IS407A, transposase OrfB 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BMAA0737 , BMAA0742

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA10247_A16801619509..1622532 [+], 3024126445998Rhs element Vgr protein BMAA0737
2BMA10247_A16751612696..1613205 [+], 510126446753hcp protein BMAA0742

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Proteins        Genes
N/A
N/A