SecReT6
I. Summary
SecReT6 ID192 insolico
StrainBurkholderia mallei NCTC 10247
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009079
Location1926550..1952825
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011211111
ComponentTssGTssJTssKTssM
Number1101
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10247_A1993 (rhlB-1)1922097..1923416 [-], 1320126446149rhamnosyltransferase I subunit B 
2BMA10247_A19941923369..1923596 [+], 228262192852hypothetical protein 
3BMA10247_A1995 (rhlA-1)1923638..1924474 [-], 837126447265rhamnosyltransferase I subunit A 
4BMA10247_A19961925088..1925363 [-], 276126446722hypothetical protein 
5BMA10247_A19971925362..1925484 [+], 123126447621hypothetical protein 
6BMA10247_A19981925684..1926109 [-], 426126447691hypothetical protein 
7BMA10247_A19991926132..1926491 [-], 360126446082hypothetical protein 
8BMA10247_A20001926550..1930053 [-], 3504126446755hypothetical protein  TssM
9BMA10247_A20011930050..1931708 [-], 1659126447196hypothetical protein  TssL
10BMA10247_A20041933149..1933742 [-], 594126446776putative lipoprotein  TssJ
11BMA10247_A20051933748..1934137 [-], 390126446926hypothetical protein 
12BMA10247_A20061934180..1934896 [-], 717126447498hypothetical protein 
13BMA10247_A20071934899..1935969 [-], 1071126445740pentapeptide repeat-containing protein 
14BMA10247_A20081935969..1938185 [-], 2217126446433hypothetical protein 
15BMA10247_A20091938189..1940477 [-], 2289126445908Rhs element Vgr protein  TssI
16BMA10247_A20101940643..1942889 [-], 2247126446562Rhs element Vgr protein  TssI
17BMA10247_A20131945753..1946742 [-], 990126447491hypothetical protein  TssG
18BMA10247_A20141946739..1948601 [-], 1863126446064hypothetical protein  TssF
19BMA10247_A20151948615..1949046 [-], 432126446766hypothetical protein  TssE
20BMA10247_A20161949126..1949653 [-], 528126447326hypothetical protein  TssD
21BMA10247_A20171949797..1951302 [-], 1506126447820hypothetical protein  TssC
22BMA10247_A20181951305..1951853 [-], 549262192894type VI secretion protein  TssB
23BMA10247_A20191951887..1952825 [-], 939126446608ImpA-related N-terminal family protein  TssA
24BMA10247_A20201954296..1954457 [-], 162126445956putative lipoprotein 
25BMA10247_A20211954534..1956048 [-], 1515126447851coenzyme A transferase 
26BMA10247_A20221956413..1957102 [+], 690126447324CDP-alcohol phosphatidyltransferase family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA10247_A20161949126..1949653 [-], 528126447326hypothetical protein YPK_3563

Download FASTA format files
Proteins        Genes
N/A
N/A