SecReT6
I. Summary
SecReT6 ID194 insolico
StrainBurkholderia mallei NCTC 10247
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_009080
Location3104148..3117534
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100010010
ComponentTssGTssJTssKTssM
Number1001
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1BMA10247_3137 (nylA)3099234..3100718 [-], 14851264496786-aminohexanoate-cyclic-dimer hydrolase 
2BMA10247_31383100821..3101513 [-], 693126448674dienelactone hydrolase 
3BMA10247_31393101709..3101825 [-], 117126449644hypothetical protein 
4BMA10247_31413102889..3103152 [+], 264126449886IS407A, transposase OrfA 
5BMA10247_31423103176..3104009 [+], 834126448871IS407A, transposase OrfB 
6BMA10247_31433104148..3104630 [+], 483126448385hypothetical protein  TssE
7BMA10247_31463106505..3107605 [+], 1101126449530hypothetical protein  TssG
8BMA10247_31473107639..3110308 [+], 2670126450804ClpA/B type protease  TssH
9BMA10247_31483110398..3111519 [+], 1122126448063ImpA-related N-terminal family protein  TssA
10BMA10247_31493111718..3112650 [-], 933126450255ompA family protein  TagL
11BMA10247_31503112655..3113644 [-], 990126451118hypothetical protein 
12BMA10247_31513113641..3117534 [-], 3894126448757hypothetical protein  TssM
13BMA10247_31523117542..3117655 [-], 114126449477hypothetical protein 
14BMA10247_31533117806..3118657 [-], 852126449822D-alanyl-D-alanine carboxypeptidase 
15BMA10247_31543118783..3119739 [+], 957126450790hypothetical protein 
16BMA10247_31553119950..3121398 [-], 1449262193262TolC family type I secretion outer membrane protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BTH_I0068 , BTH_I2705

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1BMA10247_27352694865..2695305 [+], 441126448609hypothetical protein BTH_I0068
2BMA10247_0659639532..642339 [+], 2808126450729Rhs element Vgr protein BTH_I2705

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Proteins        Genes
N/A
N/A