SecReT6
I. Summary
SecReT6 ID196 insolico
StrainBurkholderia vietnamiensis G4
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009255
Location1254088..1278896
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001200111
ComponentTssGTssJTssKTssM
Number1111
Click the above image to have a larger view
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcep1808_44231249093..1250433 [+], 1341134293118Rieske (2Fe-2S) domain-containing protein 
2Bcep1808_44241250417..1250899 [+], 483134293119aromatic-ring-hydroxylating dioxygenase subunit beta 
3Bcep1808_44251250939..1252636 [+], 1698134293120amine oxidase 
4Bcep1808_44261252651..1253376 [-], 726134293121glutathione S-transferase domain-containing protein 
5Bcep1808_44271253782..1254060 [-], 279134293122hypothetical protein  PAAR
6Bcep1808_44281254088..1254519 [-], 432134293123GPW/gp25 family protein  TssE
7Bcep1808_44291254532..1255194 [-], 663134293124hypothetical protein  TssL
8Bcep1808_44301255191..1256537 [-], 1347134293125hypothetical protein  TssK
9Bcep1808_44311256594..1258015 [-], 1422134293126hypothetical protein  TssC
10Bcep1808_44321258206..1261319 [+], 3114134293127Rhs element Vgr protein  TssI
11Bcep1808_44331261321..1261854 [+], 534134293128hypothetical protein 
12Bcep1808_44341261925..1263250 [+], 1326134293129hypothetical protein 
13Bcep1808_44351263820..1266366 [+], 2547134293130Rhs element Vgr protein  TssI
14Bcep1808_44361266379..1268532 [+], 2154134293131hypothetical protein 
15Bcep1808_44371268565..1268918 [+], 354134293132hypothetical protein 
16Bcep1808_44381268969..1270024 [+], 1056134293133integrase catalytic subunit 
17Bcep1808_44391270086..1270538 [+], 453134293134hypothetical protein 
18Bcep1808_44401270573..1271733 [+], 1161134293135hypothetical protein 
19Bcep1808_44411271735..1275289 [+], 3555134293136ImcF domain-containing protein  TssM
20Bcep1808_44421275306..1277120 [+], 1815134293137hypothetical protein  TssF
21Bcep1808_44431277183..1278199 [+], 1017134293138hypothetical protein  TssG
22Bcep1808_44441278246..1278896 [+], 651134293139hypothetical protein  TssJ
23Bcep1808_44461280260..1281315 [+], 1056134293140integrase catalytic subunit 
24Bcep1808_44471281400..1282217 [+], 818134293141transposase and inactivated derivatives-like protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






N/A
N/A
N/A