SecReT6
I. Summary
SecReT6 ID197 insolico
StrainBurkholderia vietnamiensis G4
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_009255
Location2043603..2062931
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number001100111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcep1808_51312038829..2039932 [+], 1104134293811hypothetical protein 
2Bcep1808_51322039994..2040923 [+], 930134293812putative esterase 
3Bcep1808_51332041013..2041345 [-], 333134293813cupin 
4Bcep1808_51342041415..2042893 [-], 1479134293814diguanylate cyclase 
5Bcep1808_51352043205..2043483 [-], 279134293815hypothetical protein  PAAR
6Bcep1808_51362043603..2044244 [-], 642134293816hypothetical protein  TssJ
7Bcep1808_51372044291..2045307 [-], 1017134293817hypothetical protein  TssG
8Bcep1808_51382045370..2047184 [-], 1815134293818hypothetical protein  TssF
9Bcep1808_51392047201..2050728 [-], 3528134293819ImcF domain-containing protein  TssM
10Bcep1808_51402050728..2052017 [-], 1290134293820hypothetical protein 
11Bcep1808_51412052038..2054017 [-], 1980134293821hypothetical protein 
12Bcep1808_51422054060..2054926 [-], 867134293822hypothetical protein 
13Bcep1808_51432055045..2055338 [-], 294134293823hypothetical protein 
14Bcep1808_51442055328..2055945 [-], 618134293824hypothetical protein 
15Bcep1808_51452055973..2056221 [-], 249134293825hypothetical protein 
16Bcep1808_51462056330..2058813 [-], 2484134293826Rhs element Vgr protein  TssI
17Bcep1808_51472059004..2060425 [+], 1422134293827hypothetical protein  TssC
18Bcep1808_51482060482..2061828 [+], 1347134293828hypothetical protein  TssK
19Bcep1808_51492061825..2062487 [+], 663134293829hypothetical protein  TssL
20Bcep1808_51502062500..2062931 [+], 432134293830GPW/gp25 family protein  TssE
21Bcep1808_51512063169..2064356 [-], 1188134293831OmpC family outer membrane porin 
22Bcep1808_51522064839..2065417 [-], 579134293832putative transmembrane protein 
23Bcep1808_51532065467..2066990 [-], 1524134293833L-threonine ammonia-lyase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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