SecReT6
I. Summary
SecReT6 ID198 insolico
StrainBurkholderia vietnamiensis G4
Repliconchromosome I [Browse all T6SS(s) in this replicon]
AccessionNC_009256
Location466678..512340
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111211112
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Bcep1808_0428461975..462322 [-], 348134294540hypothetical protein 
2Bcep1808_0429462315..462494 [-], 180134294541hypothetical protein 
3Bcep1808_0430462520..462822 [-], 303134294542hypothetical protein 
4Bcep1808_0431462815..462991 [-], 177134294543hypothetical protein 
5Bcep1808_0432463304..463837 [-], 534134294544hypothetical protein 
6Bcep1808_0433463834..464040 [-], 207134294545phage transcriptional regulator AlpA 
7Bcep1808_0434464164..464490 [-], 327134294546hypothetical protein 
8Bcep1808_0435464471..465784 [-], 1314134294547transposase, mutator type 
9Bcep1808_0436465858..466337 [-], 480134294548hypothetical protein 
10Bcep1808_0437466678..469149 [+], 2472134294549Rhs element Vgr protein  TssI
11Bcep1808_0438469212..469913 [+], 702134294550hypothetical protein 
12Bcep1808_0439469954..472530 [+], 2577134294551hypothetical protein 
13Bcep1808_0440472534..473625 [+], 1092134294552hypothetical protein 
14Bcep1808_0441474191..474451 [+], 261134294553PAAR repeat-containing protein  PAAR
15Bcep1808_0442474463..475602 [+], 1140134294554hypothetical protein 
16Bcep1808_0443475607..475831 [+], 225134294555hypothetical protein  TssF
17Bcep1808_0444476097..476684 [+], 588134294556resolvase domain-containing protein 
18Bcep1808_0445476771..477256 [-], 486134294557hypothetical protein 
19Bcep1808_0446477268..478401 [-], 1134134294558XRE family plasmid maintenance system antidote protein 
20Bcep1808_0447478398..478682 [-], 285134294559hypothetical protein 
21Bcep1808_0448479067..479768 [-], 702134294560hypothetical protein 
22Bcep1808_0449480091..480891 [-], 801134294561extracellular solute-binding protein 
23Bcep1808_0450480917..481093 [-], 177134294562hypothetical protein 
24Bcep1808_0451481212..484385 [+], 3174134294563Rhs element Vgr protein  TssI
25Bcep1808_0452484436..489088 [+], 4653134294564YD repeat-containing protein 
26Bcep1808_0453489088..489417 [+], 330134294565hypothetical protein 
27Bcep1808_0454489665..490939 [+], 1275134294566transposase, mutator type 
28Bcep1808_0455491226..491543 [+], 318134294567hypothetical protein 
29Bcep1808_0456491636..492418 [-], 783134294568hypothetical protein  TssL
30Bcep1808_0457492415..493761 [-], 1347134294569hypothetical protein  TssK
31Bcep1808_0458493864..494475 [-], 612134294570hypothetical protein  TssJ
32Bcep1808_0459494850..495485 [+], 636134294571hypothetical protein 
33Bcep1808_0460495540..496055 [+], 516134294572hypothetical protein  TssB
34Bcep1808_0461496071..497561 [+], 1491134294573hypothetical protein  TssC
35Bcep1808_0462497632..498135 [+], 504134294574hypothetical protein  TssD
36Bcep1808_0463498198..498683 [+], 486134294575GPW/gp25 family protein  TssE
37Bcep1808_0464498761..500596 [+], 1836134294576hypothetical protein  TssF
38Bcep1808_0465500560..501660 [+], 1101134294577hypothetical protein  TssG
39Bcep1808_0466501699..504371 [+], 2673134294578ATPase  TssH
40Bcep1808_0467504411..505532 [+], 1122134294579ImpA domain-containing protein  TssA
41Bcep1808_0468505732..506394 [-], 663134294580hypothetical protein 
42Bcep1808_0469506449..507408 [-], 960134294581OmpA/MotB domain-containing protein  TagL
43Bcep1808_0470507413..508402 [-], 990134294582hypothetical protein 
44Bcep1808_0471508399..512340 [-], 3942134294583ImcF domain-containing protein  TssM
45Bcep1808_0472512642..513253 [-], 612134294584peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 
46Bcep1808_0473513609..514577 [+], 969134294585hypothetical protein 
47Bcep1808_0474514757..515785 [+], 1029134294586Mg2+ transporter protein, CorA family protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
BCAL0343

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Bcep1808_0462497632..498135 [+], 504134294574hypothetical protein BCAL0343

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Proteins        Genes
N/A
N/A