SecReT6
I. Summary
SecReT6 ID200 insolico
StrainYersinia pestis Pestoides F
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009381
Location206026..249417
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111231112
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPDSF_0184 (malG)201559..202449 [-], 891145597500maltose transporter permease 
2YPDSF_0185 (malF)202463..204040 [-], 1578145597501maltose transporter membrane protein 
3YPDSF_0186 (malE)204227..205438 [-], 1212145597502maltose ABC transporter periplasmic protein 
4YPDSF_0187206026..206262 [+], 237145597503hypothetical protein 
5YPDSF_0188206266..207375 [+], 1110145597504maltose/maltodextrin transporter ATP-binding protein 
6YPDSF_0189 (lamB)207446..208717 [+], 1272145597505maltoporin 
7YPDSF_0190208958..209869 [+], 912145597506maltose regulon periplasmic protein 
8YPDSF_0191210208..210618 [+], 411145597507hypothetical protein 
9YPDSF_0192210770..211288 [-], 519145597508hypothetical protein  TssD
10YPDSF_0193211812..212309 [+], 498145597509hypothetical protein  TssB
11YPDSF_0194212377..213858 [+], 1482145597510hypothetical protein  TssC
12YPDSF_0195213865..214305 [+], 441145597511hypothetical protein  TssE
13YPDSF_0196214305..215531 [+], 1227145597512hypothetical protein  TssF
14YPDSF_0197215421..216206 [-], 786145597513transposase for insertion sequence IS1661 
15YPDSF_0198216260..216565 [-], 306145597514insertion element IS1661 DNA-binding protein 
16YPDSF_0199216826..217569 [+], 744145597515hypothetical protein  TssF
17YPDSF_0200217533..218621 [+], 1089145597516hypothetical protein  TssG
18YPDSF_0201218747..220063 [+], 1317145597517hypothetical protein  Fha
19YPDSF_0202220063..220608 [+], 546145597518lipoprotein  TssJ
20YPDSF_0203220611..221957 [+], 1347145597519hypothetical protein  TssK
21YPDSF_0204221957..222724 [+], 768145597520membrane protein  TssL
22YPDSF_0205222735..225329 [+], 2595145597521Clp ATPase  TssH
23YPDSF_0206225326..226123 [+], 798145597522hypothetical protein 
24YPDSF_0207226120..226806 [+], 687145597523hypothetical protein 
25YPDSF_0208226812..228200 [+], 1389145597524hypothetical protein  TssA
26YPDSF_0209228232..231765 [+], 3534145597525hypothetical protein  TssM
27YPDSF_0210231890..232672 [+], 783145597526hypothetical protein  TssA
28YPDSF_0211232579..233202 [+], 624145597527hypothetical protein  TssA
29YPDSF_0212233224..235614 [+], 2391145597528Rhs accessory genetic element  TssI
30YPDSF_0213235620..236078 [+], 459145597529hypothetical protein 
31YPDSF_0214236071..238935 [+], 2865145597530hypothetical protein  PAAR
32YPDSF_0215238963..240333 [+], 1371145597531hypothetical protein 
33YPDSF_0216240870..241061 [-], 192145597532hypothetical protein 
34YPDSF_0217241137..241361 [-], 225145597533hypothetical protein 
35YPDSF_0218241443..241850 [-], 408145597534transcriptional regulatory protein 
36YPDSF_0219242013..242189 [+], 177145597535hypothetical protein 
37YPDSF_0220242211..244409 [+], 2199145597536Rhs accessory genetic element  TssI
38YPDSF_0221244412..244834 [+], 423145597537hypothetical protein 
39YPDSF_0222244879..249417 [+], 4539145597538membrane protein  PAAR
40YPDSF_0223249426..250220 [+], 795145597539hypothetical protein 
41YPDSF_0224250567..251466 [-], 900145597540hypothetical protein 
42YPDSF_0225251463..252593 [-], 1131145597541oxidoreductase 
43YPDSF_0226252851..253729 [+], 879145597542AraC family transcription regulator 
44YPDSF_0227253891..254394 [-], 504145597543carbohydrate transport protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPDSF_0192210770..211288 [-], 519145597508hypothetical protein ECA2866

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Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation