SecReT6
I. Summary
SecReT6 ID202 insolico
StrainYersinia pestis Pestoides F
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009381
Location1668932..1713584
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPDSF_14781665145..1666407 [+], 1263145598762hypothetical protein 
2YPDSF_14791666409..1667077 [+], 669145598763ABC transporter ATP-binding protein 
3YPDSF_14801667087..1668397 [+], 1311145598764heme-binding protein 
4YPDSF_14811668932..1670206 [+], 1275145598765molybdopterin biosynthesis protein MoeA 
5YPDSF_14821670208..1670978 [+], 771145598766molybdopterin biosynthesis protein MoeB 
6YPDSF_14831671043..1671696 [-], 654145598767hypothetical protein 
7YPDSF_14841671924..1673687 [-], 1764145598768ABC transporter ATP-binding protein 
8YPDSF_14851674202..1674825 [+], 624145598769hypothetical protein 
9YPDSF_14861675037..1676404 [-], 1368145598770hypothetical protein  TssA
10YPDSF_14871676429..1676881 [-], 453145598771hypothetical protein  TssE
11YPDSF_14881676881..1677462 [-], 582145598772hypothetical protein  TssJ
12YPDSF_14891677437..1678522 [-], 1086145598773hypothetical protein  TssG
13YPDSF_14901678486..1680249 [-], 1764145598774hypothetical protein  TssF
14YPDSF_14911680470..1680940 [-], 471145598775hypothetical protein 
15YPDSF_14921680940..1681998 [-], 1059145598776hypothetical protein  PAAR
16YPDSF_14931682016..1683617 [-], 1602145598777hypothetical protein  TssA
17YPDSF_14941683661..1687083 [-], 3423145598778hypothetical protein  TssM
18YPDSF_14951687080..1688312 [-], 1233145598779hypothetical protein 
19YPDSF_14961689142..1689315 [+], 174145598780IS630 orf 
20YPDSF_14971689424..1689744 [+], 321145598781transposase 
21YPDSF_14981689875..1690012 [+], 138145598782transposase 
22YPDSF_14991691120..1693303 [-], 2184145598783hypothetical protein 
23YPDSF_15001693319..1693579 [-], 261145598784hypothetical protein 
24YPDSF_15011693733..1694506 [-], 774145598785hypothetical protein 
25YPDSF_15021694503..1696734 [-], 2232145598786hypothetical protein 
26YPDSF_15031696819..1699167 [-], 2349145598787hypothetical protein  TssI
27YPDSF_15041699170..1701812 [-], 2643145598788ATPase subunit of ATP-dependent protease  TssH
28YPDSF_15051702200..1702691 [-], 492145598789hypothetical protein  TssD
29YPDSF_15061702233..1702718 [+], 486145598790hypothetical protein 
30YPDSF_15071702695..1704431 [-], 1737145598791hypothetical protein  TagL
31YPDSF_15081704431..1705117 [-], 687145598792membrane protein  TssL
32YPDSF_15091705114..1706466 [-], 1353145598793hypothetical protein  TssK
33YPDSF_15101706478..1708022 [-], 1545145598794hypothetical protein  TssC
34YPDSF_15111708071..1708571 [-], 501145598795hypothetical protein  TssB
35YPDSF_15121709560..1710408 [-], 849145598796acyl transferase 
36YPDSF_15131710793..1711281 [-], 489145598797hypothetical protein 
37YPDSF_15141711320..1712108 [-], 789145598798short chain dehydrogenase 
38YPDSF_15151712111..1712887 [-], 777145598799polyketide biosynthesis enoyl-CoA hydratase 
39YPDSF_15161712865..1713584 [-], 720145598800enoyl-CoA hydratase 
40YPDSF_15171713577..1714815 [-], 1239145598801putative hydroxymethylglutaryl-coenzyme A synthase 
41YPDSF_15181714831..1715577 [-], 747145598802beta-ketoacyl-(acyl-carrier-protein) reductase 
42YPDSF_15191715570..1716853 [-], 1284145598803beta-ketoacyl-(acyl-carrier-protein) synthase 
43YPDSF_15201716843..1717367 [-], 525145598804(3R)-hydroxymyristoyl-ACP dehydratase 
44YPDSF_15211717631..1717951 [-], 321145598805hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPDSF_15051702200..1702691 [-], 492145598789hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation