SecReT6
I. Summary
SecReT6 ID204 insolico
StrainYersinia pestis Pestoides F
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009381
Location3537825..3574344
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111111
ComponentTssGTssJTssKTssM
Number1111
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPDSF_3112 (tbpA)3533437..3534513 [+], 1077145600367thiamine transporter substrate binding subunit 
2YPDSF_3113 (thiP)3534477..3536096 [+], 1620145600368thiamine transporter membrane protein 
3YPDSF_3114 (thiQ)3536083..3536793 [+], 711145600369thiamine transporter ATP-binding protein 
4YPDSF_31153536862..3537629 [-], 768145600370DedA family membrane protein 
5YPDSF_31163537825..3540194 [+], 2370145600371DNA polymerase II 
6YPDSF_31173540639..3543545 [+], 2907145600372ATP-dependent helicase HepA 
7YPDSF_31183543801..3544154 [-], 354145600373hypothetical protein 
8YPDSF_31193544176..3547670 [-], 3495145600374membrane protein  TssM
9YPDSF_31203547679..3549268 [-], 1590145600375hypothetical protein  TssL
10YPDSF_31213549265..3550620 [-], 1356145600376hypothetical protein  TssK
11YPDSF_31223550740..3551231 [-], 492145600377putative lipoprotein  TssJ
12YPDSF_31233551224..3551589 [-], 366145600378hypothetical protein  PAAR
13YPDSF_31243551595..3552212 [-], 618145600379hypothetical protein 
14YPDSF_31253552205..3553308 [-], 1104145600380hypothetical protein 
15YPDSF_31263553334..3555553 [-], 2220145600381hypothetical protein 
16YPDSF_31273555566..3557914 [-], 2349145600382hypothetical protein  TssI
17YPDSF_31283558018..3560606 [-], 2589145600383Clp ATPase  TssH
18YPDSF_31293560624..3561607 [-], 984145600384hypothetical protein  TssG
19YPDSF_31303561600..3563444 [-], 1845145600385hypothetical protein  TssF
20YPDSF_31313563477..3563920 [-], 444145600386hypothetical protein  TssE
21YPDSF_31323563994..3564512 [-], 519145600387hypothetical protein  TssD
22YPDSF_31333564675..3566186 [-], 1512145600388hypothetical protein  TssC
23YPDSF_31343566186..3566746 [-], 561145600389hypothetical protein  TssB
24YPDSF_31353566757..3567755 [-], 999145600390hypothetical protein  TssA
25YPDSF_31363568181..3568843 [+], 663145600391hypothetical protein 
26YPDSF_31373570066..3570686 [+], 621145600392ribosomal large subunit pseudouridine synthase A 
27YPDSF_3138 (djlA)3570984..3571817 [-], 834145600393Dna-J like membrane chaperone protein 
28YPDSF_31393571966..3574344 [+], 2379145600394organic solvent tolerance protein 
29YPDSF_31403574412..3575716 [+], 1305145600395peptidyl-prolyl cis-trans isomerase SurA 
30YPDSF_3141 (pdxA)3575691..3576695 [+], 10051456003964-hydroxythreonine-4-phosphate dehydrogenase 
31YPDSF_3142 (ksgA)3576688..3577506 [+], 819145600397dimethyladenosine transferase 
32YPDSF_3143 (apaG)3577520..3577897 [+], 378145600398ApaG protein 
33YPDSF_3144 (apaH)3577914..3578783 [+], 870145600399diadenosine tetraphosphatase 
34YPDSF_31453578873..3579337 [-], 465145600400hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
YPK_3558 , YPK_3563

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPDSF_31273555566..3557914 [-], 2349145600382hypothetical protein YPK_3558
2YPDSF_31323563994..3564512 [-], 519145600387hypothetical protein YPK_3563

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation