SecReT6
I. Summary
SecReT6 ID210 insolico
StrainAcidiphilium cryptum JF-5
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_009484
Location3348345..3360899
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number110011211
ComponentTssGTssJTssKTssM
Number1000
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III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Acry_30623343997..3344524 [-], 528148262043hypothetical protein 
2Acry_30633344546..3345529 [-], 984148262044malate dehydrogenase 
3Acry_30643345626..3346213 [+], 588148262045hypothetical protein 
4Acry_30653346262..3346567 [+], 306148262046hypothetical protein 
5Acry_30663346606..3347547 [-], 942148262047LysR family transcriptional regulator 
6Acry_30683348345..3348830 [-], 486148262048hypothetical protein  TssD
7Acry_30693348860..3351508 [-], 2649148262049ATPase  TssH
8Acry_30703351662..3352780 [+], 1119148262050ImpA domain-containing protein  TssA
9Acry_30713352802..3354295 [-], 1494148262051hypothetical protein  TssC
10Acry_30723354316..3355809 [-], 1494148262052hypothetical protein  TssC
11Acry_30733355813..3356319 [-], 507148262053hypothetical protein  TssB
12Acry_30743356647..3357462 [+], 816148262054virulence protein, SciE type  TagJ
13Acry_30753357462..3357983 [+], 522148262055GPW/gp25 family protein  TssE
14Acry_30763357976..3359793 [+], 1818148262056hypothetical protein  TssF
15Acry_30773359790..3360899 [+], 1110148262057hypothetical protein  TssG
16Acry_30783360896..3362434 [+], 1539148262058type 12 methyltransferase 
17Acry_30793362448..3363557 [-], 1110148262059hypothetical protein 
18Acry_30803363554..3364147 [-], 594148262060hypothetical protein 
19Acry_30813364397..3365095 [-], 699148262061phospholipid/glycerol acyltransferase 
20Acry_30823365095..3365751 [-], 657148262062hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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